Issue with version 18.0.2 #957

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ankushreddy opened this Issue Feb 23, 2016 · 3 comments

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@ankushreddy

Hi am actually using a SNAP to align the fastq files using a single chromosome reference fasta file.
After this process when I try to use the transform command from adam to convert it from sam to parquet (adam) format after stage 0.0 tasks there are no new tasks getting started and cli is in stable state
image
it is standing there for hours.
Could you please look into this issue.

@fnothaft

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fnothaft Feb 23, 2016

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Hi @ankushreddy, this issue doesn't contain sufficient information to reproduce your issue. If possible, can you send us:

  • Command line used for alignment
  • Contig used for alignment
  • FASTQ input
  • Command line used for ADAM transform
  • Spark/Hadoop versions
  • Cluster scheduling mode (e.g., YARN, standalone, etc)
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fnothaft commented Feb 23, 2016

Hi @ankushreddy, this issue doesn't contain sufficient information to reproduce your issue. If possible, can you send us:

  • Command line used for alignment
  • Contig used for alignment
  • FASTQ input
  • Command line used for ADAM transform
  • Spark/Hadoop versions
  • Cluster scheduling mode (e.g., YARN, standalone, etc)
@heuermh

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heuermh Apr 7, 2016

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@ankushreddy is this still an issue for you?

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heuermh commented Apr 7, 2016

@ankushreddy is this still an issue for you?

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ankushreddy Apr 8, 2016

@heuermh it got resolved Thanks.

@heuermh it got resolved Thanks.

@ankushreddy ankushreddy closed this Apr 8, 2016

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