require kryo registration in tests #1020

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merged 1 commit into from Apr 28, 2016

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ryan-williams commented Apr 26, 2016

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Test FAILed.
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Build result: FAILURE

GitHub pull request #1020 of commit be48ef6 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 800261e6bc1cccf11b4eb5690bd08352e3c09dc9 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 800261e6bc1cccf11b4eb5690bd08352e3c09dc9 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 800261e6bc1cccf11b4eb5690bd08352e3c09dc9First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
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Build result: FAILURE

GitHub pull request #1020 of commit be48ef6 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 800261e6bc1cccf11b4eb5690bd08352e3c09dc9 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 800261e6bc1cccf11b4eb5690bd08352e3c09dc9 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 800261e6bc1cccf11b4eb5690bd08352e3c09dc9First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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jenkins, retest this please

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ryan-williams commented Apr 26, 2016

jenkins, retest this please

@@ -31,7 +31,9 @@ trait ADAMFunSuite extends SparkFunSuite {
override val properties: Map[String, String] = Map(
("spark.serializer", "org.apache.spark.serializer.KryoSerializer"),
("spark.kryo.registrator", "org.bdgenomics.adam.serialization.ADAMKryoRegistrator"),
- ("spark.kryo.referenceTracking", "true"))
+ ("spark.kryo.referenceTracking", "true"),
+ "spark.kryo.registrationRequired" -> "true"

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Could we have this in tuple form, or convert the other entries to map style? I'd just like all to be consistent.

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Could we have this in tuple form, or convert the other entries to map style? I'd just like all to be consistent.

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ah, woops, done!

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ah, woops, done!

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Test FAILed.
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Build result: FAILURE

GitHub pull request #1020 of commit 9f102aa automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
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Build result: FAILURE

GitHub pull request #1020 of commit 9f102aa automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit 4047c3b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1183/

Build result: FAILURE

GitHub pull request #1020 of commit 4047c3b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit 76a0fc5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1184/

Build result: FAILURE

GitHub pull request #1020 of commit 76a0fc5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 394bc9ca51e1b910613e4e88680b6e9ae1cbe58bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
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Build result: FAILURE

GitHub pull request #1020 of commit c24aae5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11 > git rev-list 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1186/

Build result: FAILURE

GitHub pull request #1020 of commit c24aae5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11 > git rev-list 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please

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Last build failure mentions c24aae5 but seems to check out and test 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b, which I can't even find in my local checkout of ADAM, so I'm not sure what happened there but am hoping a retest will pick up my HEAD commit here, c24aae5

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ryan-williams commented Apr 27, 2016

Last build failure mentions c24aae5 but seems to check out and test 394bc9ca51e1b910613e4e88680b6e9ae1cbe58b, which I can't even find in my local checkout of ADAM, so I'm not sure what happened there but am hoping a retest will pick up my HEAD commit here, c24aae5

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1188/

Build result: FAILURE

GitHub pull request #1020 of commit c24aae5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11 > git rev-list c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1188/

Build result: FAILURE

GitHub pull request #1020 of commit c24aae5 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11 > git rev-list c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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OK, that picked up my last commit, and apparently there's more that I need to register.

What I don't understand is that only two builds in the matrix have been failing this whole time, and I can't reproduce those failures locally.

Jenkins runs:

mvn clean package -Dhadoop.version=2.6.0 -Dspark.version=1.5.2

and the FlattenSuite in adam-cli fails.

When I run locally:

mvn clean test -Dsuites='*FlattenSuite*' -pl adam-cli -Dhadoop.version=2.6.0 -Dspark.version=1.5.2

the test passes.

Also only the Spark 1.5.2, Hadoop 2.6.0 builds fail.

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ryan-williams commented Apr 27, 2016

OK, that picked up my last commit, and apparently there's more that I need to register.

What I don't understand is that only two builds in the matrix have been failing this whole time, and I can't reproduce those failures locally.

Jenkins runs:

mvn clean package -Dhadoop.version=2.6.0 -Dspark.version=1.5.2

and the FlattenSuite in adam-cli fails.

When I run locally:

mvn clean test -Dsuites='*FlattenSuite*' -pl adam-cli -Dhadoop.version=2.6.0 -Dspark.version=1.5.2

the test passes.

Also only the Spark 1.5.2, Hadoop 2.6.0 builds fail.

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fnothaft Apr 27, 2016

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Also only the Spark 1.5.2, Hadoop 2.6.0 builds fail.

We only run all of the other build configurations if the Spark 1.5.2/Hadoop 2.6.0 builds pass. If they fail, we don't run the other builds.

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fnothaft commented Apr 27, 2016

Also only the Spark 1.5.2, Hadoop 2.6.0 builds fail.

We only run all of the other build configurations if the Spark 1.5.2/Hadoop 2.6.0 builds pass. If they fail, we don't run the other builds.

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What I don't understand is that only two builds in the matrix have been failing this whole time

They are set to be the default build configuration, in that if they fail, the rest are not run. Unfortunately the Jenkins matrix chart shows green for the rest of the build configurations, even though those were not run.

$ HADOOP_VERSION=2.6.0 SPARK_VERSION=1.5.2 ./scripts/jenkins-test

should replicate what you see in Jenkins.

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heuermh commented Apr 27, 2016

What I don't understand is that only two builds in the matrix have been failing this whole time

They are set to be the default build configuration, in that if they fail, the rest are not run. Unfortunately the Jenkins matrix chart shows green for the rest of the build configurations, even though those were not run.

$ HADOOP_VERSION=2.6.0 SPARK_VERSION=1.5.2 ./scripts/jenkins-test

should replicate what you see in Jenkins.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1189/

Build result: FAILURE

GitHub pull request #1020 of commit b527f18 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 2ba4ee6518f25684e384bb40f90a9ade10f83eec (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 2ba4ee6518f25684e384bb40f90a9ade10f83eec > git rev-list c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1189/

Build result: FAILURE

GitHub pull request #1020 of commit b527f18 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 2ba4ee6518f25684e384bb40f90a9ade10f83eec (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 2ba4ee6518f25684e384bb40f90a9ade10f83eec > git rev-list c637cf7fe857fdd53e6c25513cb059723e4e7c11 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Thanks for the info about the 1.5.2/2.6.0 builds!

Jenkins still seems to not pick up my commit after I force-push. atm my HEAD commit is b527f18; here's what the last Jenkins run shows:

originally caused by:
 GitHub pull request #1020 of commit b527f1887de27b66dc17df5c0ab02def84f71a15 automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-worker-04 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.6.0/SCALAVER/2.10/SPARK_VERSION/1.5.2/label/centos
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/*
Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11

It prints b527f18 at first, but then checks out c637cf7fe857fdd53e6c25513cb059723e4e7c11, which again I can't find anywhere.

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ryan-williams commented Apr 27, 2016

Thanks for the info about the 1.5.2/2.6.0 builds!

Jenkins still seems to not pick up my commit after I force-push. atm my HEAD commit is b527f18; here's what the last Jenkins run shows:

originally caused by:
 GitHub pull request #1020 of commit b527f1887de27b66dc17df5c0ab02def84f71a15 automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-worker-04 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.6.0/SCALAVER/2.10/SPARK_VERSION/1.5.2/label/centos
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/*
Checking out Revision c637cf7fe857fdd53e6c25513cb059723e4e7c11 (origin/pr/1020/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c637cf7fe857fdd53e6c25513cb059723e4e7c11

It prints b527f18 at first, but then checks out c637cf7fe857fdd53e6c25513cb059723e4e7c11, which again I can't find anywhere.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1190/

Build result: FAILURE

GitHub pull request #1020 of commit b527f18 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 2ba4ee6518f25684e384bb40f90a9ade10f83eec (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 2ba4ee6518f25684e384bb40f90a9ade10f83eec > git rev-list 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1190/

Build result: FAILURE

GitHub pull request #1020 of commit b527f18 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 2ba4ee6518f25684e384bb40f90a9ade10f83eec (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 2ba4ee6518f25684e384bb40f90a9ade10f83eec > git rev-list 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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I ran

HADOOP_VERSION=2.6.0 SPARK_VERSION=1.5.2 ./scripts/jenkins-test

and the failing test here (FlattenSuite) passed; still failing via Jenkins 😢

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ryan-williams commented Apr 27, 2016

I ran

HADOOP_VERSION=2.6.0 SPARK_VERSION=1.5.2 ./scripts/jenkins-test

and the failing test here (FlattenSuite) passed; still failing via Jenkins 😢

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1191/

Build result: FAILURE

GitHub pull request #1020 of commit fc60199 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb > git rev-list 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1191/

Build result: FAILURE

GitHub pull request #1020 of commit fc60199 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb > git rev-list 2ba4ee6518f25684e384bb40f90a9ade10f83eec # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1192/

Build result: FAILURE

GitHub pull request #1020 of commit fc60199 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb > git rev-list 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1192/

Build result: FAILURE

GitHub pull request #1020 of commit fc60199 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb > git rev-list 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1193/

Build result: FAILURE

GitHub pull request #1020 of commit 2ef52bb automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 > git rev-list 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1193/

Build result: FAILURE

GitHub pull request #1020 of commit 2ef52bb automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 > git rev-list 681e81a9c0bdc56f36ee4186e5ea09f86579d7cb # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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This looks like the usual "commit not found" issue that happens after a force-push; however, I specifically didn't force-push the commit that triggered this build, to try to see if that simplified my iterations here.

Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

This looks like the usual "commit not found" issue that happens after a force-push; however, I specifically didn't force-push the commit that triggered this build, to try to see if that simplified my iterations here.

Jenkins, retest this please.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1194/

Build result: FAILURE

GitHub pull request #1020 of commit 2ef52bb automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 > git rev-list 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1194/

Build result: FAILURE

GitHub pull request #1020 of commit 2ef52bb automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 > git rev-list 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1195/

Build result: FAILURE

GitHub pull request #1020 of commit 92c87a7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 22c9b054830cabe68dc80f6dfda686b08dedc7ef (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 22c9b054830cabe68dc80f6dfda686b08dedc7ef > git rev-list 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1195/

Build result: FAILURE

GitHub pull request #1020 of commit 92c87a7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 22c9b054830cabe68dc80f6dfda686b08dedc7ef (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 22c9b054830cabe68dc80f6dfda686b08dedc7ef > git rev-list 9ab067f0c397f03cf2b792e1ccc7951dee35dea2 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1196/

Build result: FAILURE

GitHub pull request #1020 of commit 92c87a7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 22c9b054830cabe68dc80f6dfda686b08dedc7ef (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 22c9b054830cabe68dc80f6dfda686b08dedc7ef > git rev-list 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1196/

Build result: FAILURE

GitHub pull request #1020 of commit 92c87a7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 22c9b054830cabe68dc80f6dfda686b08dedc7ef (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 22c9b054830cabe68dc80f6dfda686b08dedc7ef > git rev-list 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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@fnothaft @massie @shaneknapp It is possible there is something else at play here? I had a similar amount of trouble with Jenkins builds on #979. I don't think it is right to force dealing with all these failed builds on external collaborators. Not everyone has as much patience as @ryan-williams (and thank you for it!).

What do folks think about dropping Jenkins for pull request builds and using Travis instead?

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heuermh commented Apr 27, 2016

@fnothaft @massie @shaneknapp It is possible there is something else at play here? I had a similar amount of trouble with Jenkins builds on #979. I don't think it is right to force dealing with all these failed builds on external collaborators. Not everyone has as much patience as @ryan-williams (and thank you for it!).

What do folks think about dropping Jenkins for pull request builds and using Travis instead?

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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1197/

Build result: FAILURE

GitHub pull request #1020 of commit 34932cd automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision af7a4f98ddcb4aa2035464dada0c214580c18ee6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f af7a4f98ddcb4aa2035464dada0c214580c18ee6 > git rev-list 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1197/

Build result: FAILURE

GitHub pull request #1020 of commit 34932cd automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision af7a4f98ddcb4aa2035464dada0c214580c18ee6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f af7a4f98ddcb4aa2035464dada0c214580c18ee6 > git rev-list 22c9b054830cabe68dc80f6dfda686b08dedc7ef # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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TBH, without any real background in this right now, i'd be really hesitant to ditch jenkins for an entirely new build system setup. i'll talk to @fnothaft right now and get his input/feelings.

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shaneknapp commented Apr 27, 2016

TBH, without any real background in this right now, i'd be really hesitant to ditch jenkins for an entirely new build system setup. i'll talk to @fnothaft right now and get his input/feelings.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1198/

Build result: FAILURE

GitHub pull request #1020 of commit 34932cd automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision af7a4f98ddcb4aa2035464dada0c214580c18ee6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f af7a4f98ddcb4aa2035464dada0c214580c18ee6 > git rev-list af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1198/

Build result: FAILURE

GitHub pull request #1020 of commit 34932cd automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision af7a4f98ddcb4aa2035464dada0c214580c18ee6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f af7a4f98ddcb4aa2035464dada0c214580c18ee6 > git rev-list af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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@heuermh While there are known issues with Jenkins' git support and force pushes, we don't have the build engineering bandwidth to move this build to another system while still supporting all other builds on Jenkins. I haven't been following this pull request in any detail so I can't comment as to whether the build issues are Jenkins related or not other than the Jenkins picking the wrong git commit, which as mentioned, is a known issue.

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fnothaft commented Apr 27, 2016

@heuermh While there are known issues with Jenkins' git support and force pushes, we don't have the build engineering bandwidth to move this build to another system while still supporting all other builds on Jenkins. I haven't been following this pull request in any detail so I can't comment as to whether the build issues are Jenkins related or not other than the Jenkins picking the wrong git commit, which as mentioned, is a known issue.

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One thing that seems to be happening here that I've not previously observed is Jenkins not finding commits even without me force-pushing.

Since fc60199, I've not force-pushed any commits, and at each regularly-pushed commit since, there's been a failed Jenkins run that only picked up the commit on a retest:

  • 2ef52bb
    • 1193: "Could not checkout".
    • 1194: retest picked up commit.
  • 92c87a7
    • 1195: "Could not checkout".
    • 1196: retest picked up commit.
  • 34932cd
    • 1197: started to run, but the test failure observed implies that 34932cd was not included:

      Note: To register this class use: kryo.register(org.apache.avro.Schema$LockableArrayList.class);
      
    • 1198: retest picked up 34932cd and showed a different test failure (which is what 1197 should have done).

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ryan-williams commented Apr 27, 2016

One thing that seems to be happening here that I've not previously observed is Jenkins not finding commits even without me force-pushing.

Since fc60199, I've not force-pushed any commits, and at each regularly-pushed commit since, there's been a failed Jenkins run that only picked up the commit on a retest:

  • 2ef52bb
    • 1193: "Could not checkout".
    • 1194: retest picked up commit.
  • 92c87a7
    • 1195: "Could not checkout".
    • 1196: retest picked up commit.
  • 34932cd
    • 1197: started to run, but the test failure observed implies that 34932cd was not included:

      Note: To register this class use: kryo.register(org.apache.avro.Schema$LockableArrayList.class);
      
    • 1198: retest picked up 34932cd and showed a different test failure (which is what 1197 should have done).

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Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1199/

Build result: FAILURE

GitHub pull request #1020 of commit edd2152 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 > git rev-list af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1199/

Build result: FAILURE

GitHub pull request #1020 of commit edd2152 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 > git rev-list af7a4f98ddcb4aa2035464dada0c214580c18ee6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Seeing the same thing again: 1199 couldn't find the commit edd2152 even though it was not force-pushed.

Has this behavior been observed to happen on PRs that have ever involved force-pushed commits?

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ryan-williams commented Apr 27, 2016

Seeing the same thing again: 1199 couldn't find the commit edd2152 even though it was not force-pushed.

Has this behavior been observed to happen on PRs that have ever involved force-pushed commits?

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1200/

Build result: FAILURE

GitHub pull request #1020 of commit edd2152 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 > git rev-list 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1200/

Build result: FAILURE

GitHub pull request #1020 of commit edd2152 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 > git rev-list 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1201/

Build result: FAILURE

GitHub pull request #1020 of commit 04d9d2b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 6b8e2a960140ebb96499ce16f06a3a454bef1907 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b8e2a960140ebb96499ce16f06a3a454bef1907 > git rev-list 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1201/

Build result: FAILURE

GitHub pull request #1020 of commit 04d9d2b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 6b8e2a960140ebb96499ce16f06a3a454bef1907 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b8e2a960140ebb96499ce16f06a3a454bef1907 > git rev-list 706ba1ef86c8817f4641f2b71363cf8ebc9c1ed6 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit 04d9d2b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 6b8e2a960140ebb96499ce16f06a3a454bef1907 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b8e2a960140ebb96499ce16f06a3a454bef1907 > git rev-list 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1202/

Build result: FAILURE

GitHub pull request #1020 of commit 04d9d2b automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 6b8e2a960140ebb96499ce16f06a3a454bef1907 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b8e2a960140ebb96499ce16f06a3a454bef1907 > git rev-list 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1203/

Build result: FAILURE

GitHub pull request #1020 of commit d404e26 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision bf70d27c0fa33f11a3c84176e3124ddc39983fa5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f bf70d27c0fa33f11a3c84176e3124ddc39983fa5 > git rev-list 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1203/

Build result: FAILURE

GitHub pull request #1020 of commit d404e26 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision bf70d27c0fa33f11a3c84176e3124ddc39983fa5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f bf70d27c0fa33f11a3c84176e3124ddc39983fa5 > git rev-list 6b8e2a960140ebb96499ce16f06a3a454bef1907 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1204/

Build result: FAILURE

GitHub pull request #1020 of commit d404e26 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision bf70d27c0fa33f11a3c84176e3124ddc39983fa5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f bf70d27c0fa33f11a3c84176e3124ddc39983fa5 > git rev-list bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1204/

Build result: FAILURE

GitHub pull request #1020 of commit d404e26 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision bf70d27c0fa33f11a3c84176e3124ddc39983fa5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f bf70d27c0fa33f11a3c84176e3124ddc39983fa5 > git rev-list bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit 8ec3eb7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 978da84e81b21363b798ff532ee1751504d76600 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 978da84e81b21363b798ff532ee1751504d76600 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 978da84e81b21363b798ff532ee1751504d76600 > git rev-list bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1205/

Build result: FAILURE

GitHub pull request #1020 of commit 8ec3eb7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 978da84e81b21363b798ff532ee1751504d76600 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 978da84e81b21363b798ff532ee1751504d76600 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 978da84e81b21363b798ff532ee1751504d76600 > git rev-list bf70d27c0fa33f11a3c84176e3124ddc39983fa5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1206/

Build result: FAILURE

GitHub pull request #1020 of commit 8ec3eb7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 978da84e81b21363b798ff532ee1751504d76600 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 978da84e81b21363b798ff532ee1751504d76600 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 978da84e81b21363b798ff532ee1751504d76600 > git rev-list 978da84e81b21363b798ff532ee1751504d76600 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1206/

Build result: FAILURE

GitHub pull request #1020 of commit 8ec3eb7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 978da84e81b21363b798ff532ee1751504d76600 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 978da84e81b21363b798ff532ee1751504d76600 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 978da84e81b21363b798ff532ee1751504d76600 > git rev-list 978da84e81b21363b798ff532ee1751504d76600 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit 4748c7a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 811b98531a7d43ea500aef82f42139206bde4fa0 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 811b98531a7d43ea500aef82f42139206bde4fa0 > git rev-list 978da84e81b21363b798ff532ee1751504d76600 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1207/

Build result: FAILURE

GitHub pull request #1020 of commit 4748c7a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 811b98531a7d43ea500aef82f42139206bde4fa0 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 811b98531a7d43ea500aef82f42139206bde4fa0 > git rev-list 978da84e81b21363b798ff532ee1751504d76600 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 27, 2016

Jenkins, retest this please.

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Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1208/

Build result: FAILURE

GitHub pull request #1020 of commit 4748c7a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 811b98531a7d43ea500aef82f42139206bde4fa0 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 811b98531a7d43ea500aef82f42139206bde4fa0 > git rev-list 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1208/

Build result: FAILURE

GitHub pull request #1020 of commit 4748c7a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 811b98531a7d43ea500aef82f42139206bde4fa0 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 811b98531a7d43ea500aef82f42139206bde4fa0 > git rev-list 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1209/

Build result: FAILURE

GitHub pull request #1020 of commit 96a1787 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 > git rev-list 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1209/

Build result: FAILURE

GitHub pull request #1020 of commit 96a1787 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 > git rev-list 811b98531a7d43ea500aef82f42139206bde4fa0 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
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Build result: FAILURE

GitHub pull request #1020 of commit 96a1787 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 > git rev-list a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1210/

Build result: FAILURE

GitHub pull request #1020 of commit 96a1787 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 > git rev-list a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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the "could not checkout" errors are caused by github not returning a 200 on
the http connection for the fetch. i have put much investigation in to
this, and have ruled out anything on our end (meaning it's not excess
network traffic, github rate limiting, etc).

usually a retrigger will get the fetch to actually catch, but i will set up
a local git mirror for the repo on all of the workers. this was affecting
spark builds really badly, and some databricks folks and i hammered out the
setup and it's worked really well for them.

i'll get the local mirrors set up tomorrow. it won't take long, or
interrupt builds.

shane

On Wed, Apr 27, 2016 at 2:21 PM, Ryan Williams notifications@github.com
wrote:

One thing that seems to be happening here that I've not previously
observed is Jenkins not finding commits even without me force-pushing.

Since fc60199
fc60199,
I've not force-pushed any commits, and at each regularly-pushed commit
since, there's been a failed Jenkins run that only picked up the commit on
a retest:


You are receiving this because you were mentioned.
Reply to this email directly or view it on GitHub
#1020 (comment)

Contributor

shaneknapp commented Apr 28, 2016

the "could not checkout" errors are caused by github not returning a 200 on
the http connection for the fetch. i have put much investigation in to
this, and have ruled out anything on our end (meaning it's not excess
network traffic, github rate limiting, etc).

usually a retrigger will get the fetch to actually catch, but i will set up
a local git mirror for the repo on all of the workers. this was affecting
spark builds really badly, and some databricks folks and i hammered out the
setup and it's worked really well for them.

i'll get the local mirrors set up tomorrow. it won't take long, or
interrupt builds.

shane

On Wed, Apr 27, 2016 at 2:21 PM, Ryan Williams notifications@github.com
wrote:

One thing that seems to be happening here that I've not previously
observed is Jenkins not finding commits even without me force-pushing.

Since fc60199
fc60199,
I've not force-pushed any commits, and at each regularly-pushed commit
since, there's been a failed Jenkins run that only picked up the commit on
a retest:


You are receiving this because you were mentioned.
Reply to this email directly or view it on GitHub
#1020 (comment)

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Thanks @shaneknapp! Weird that Github is reliably returning not-200 for these fetches for non-force-pushed commits…

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ryan-williams commented Apr 28, 2016

Thanks @shaneknapp! Weird that Github is reliably returning not-200 for these fetches for non-force-pushed commits…

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1211/

Build result: FAILURE

GitHub pull request #1020 of commit 5c6339a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision ddd44f87a2322e360015ede2439f13a5aeacc546 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f ddd44f87a2322e360015ede2439f13a5aeacc546 > git rev-list a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1211/

Build result: FAILURE

GitHub pull request #1020 of commit 5c6339a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision ddd44f87a2322e360015ede2439f13a5aeacc546 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f ddd44f87a2322e360015ede2439f13a5aeacc546 > git rev-list a2be2b50056b8f2e775c825d06cc1ce6a1b2eae5 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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i'll get the local mirrors set up tomorrow. it won't take long, or
interrupt builds.

Awesome! Thanks @shaneknapp!

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fnothaft commented Apr 28, 2016

i'll get the local mirrors set up tomorrow. it won't take long, or
interrupt builds.

Awesome! Thanks @shaneknapp!

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1212/

Build result: FAILURE

GitHub pull request #1020 of commit 5c6339a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision ddd44f87a2322e360015ede2439f13a5aeacc546 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f ddd44f87a2322e360015ede2439f13a5aeacc546 > git rev-list ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1212/

Build result: FAILURE

GitHub pull request #1020 of commit 5c6339a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision ddd44f87a2322e360015ede2439f13a5aeacc546 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f ddd44f87a2322e360015ede2439f13a5aeacc546 > git rev-list ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1213/

Build result: FAILURE

GitHub pull request #1020 of commit af63909 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 55580c86dc0c808036ea7241884ba59571a01d54 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 55580c86dc0c808036ea7241884ba59571a01d54 > git rev-list ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1213/

Build result: FAILURE

GitHub pull request #1020 of commit af63909 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 55580c86dc0c808036ea7241884ba59571a01d54 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 55580c86dc0c808036ea7241884ba59571a01d54 > git rev-list ddd44f87a2322e360015ede2439f13a5aeacc546 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1214/

Build result: FAILURE

GitHub pull request #1020 of commit af63909 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 55580c86dc0c808036ea7241884ba59571a01d54 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 55580c86dc0c808036ea7241884ba59571a01d54 > git rev-list 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1214/

Build result: FAILURE

GitHub pull request #1020 of commit af63909 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 55580c86dc0c808036ea7241884ba59571a01d54 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 55580c86dc0c808036ea7241884ba59571a01d54 > git rev-list 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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yeah, it is weird. and not reproduceable on the command line (trust me, i
tried). it's also random enough that it's almost impossible to catch when
it happens, and there's enough traffic that tcpdum/wireshark would be
really hard to set up. it's most likely something horribly broken in the
interactions between the pull request builder plugin and/or the jenkins git
plugins.

this was my tire fire for a number of months. :)

On Wed, Apr 27, 2016 at 5:12 PM, Ryan Williams notifications@github.com
wrote:

Thanks @shaneknapp https://github.com/shaneknapp! Weird that Github is
reliably returning not-200 for these fetches for non-force-pushed commits…


You are receiving this because you were mentioned.
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#1020 (comment)

Contributor

shaneknapp commented Apr 28, 2016

yeah, it is weird. and not reproduceable on the command line (trust me, i
tried). it's also random enough that it's almost impossible to catch when
it happens, and there's enough traffic that tcpdum/wireshark would be
really hard to set up. it's most likely something horribly broken in the
interactions between the pull request builder plugin and/or the jenkins git
plugins.

this was my tire fire for a number of months. :)

On Wed, Apr 27, 2016 at 5:12 PM, Ryan Williams notifications@github.com
wrote:

Thanks @shaneknapp https://github.com/shaneknapp! Weird that Github is
reliably returning not-200 for these fetches for non-force-pushed commits…


You are receiving this because you were mentioned.
Reply to this email directly or view it on GitHub
#1020 (comment)

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Gotcha! I seem to be reproducing it pretty reliably here, lmk if you want to try to catch it the next time around, which surely is about to happen given the commit I just pushed…

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ryan-williams commented Apr 28, 2016

Gotcha! I seem to be reproducing it pretty reliably here, lmk if you want to try to catch it the next time around, which surely is about to happen given the commit I just pushed…

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1215/

Build result: FAILURE

GitHub pull request #1020 of commit 7a31a34 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a1e795cdc853a760c783d88f99ad047f91650c02 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a1e795cdc853a760c783d88f99ad047f91650c02 > git rev-list 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1215/

Build result: FAILURE

GitHub pull request #1020 of commit 7a31a34 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a1e795cdc853a760c783d88f99ad047f91650c02 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a1e795cdc853a760c783d88f99ad047f91650c02 > git rev-list 55580c86dc0c808036ea7241884ba59571a01d54 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1216/

Build result: FAILURE

GitHub pull request #1020 of commit 7a31a34 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a1e795cdc853a760c783d88f99ad047f91650c02 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a1e795cdc853a760c783d88f99ad047f91650c02 > git rev-list a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1216/

Build result: FAILURE

GitHub pull request #1020 of commit 7a31a34 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision a1e795cdc853a760c783d88f99ad047f91650c02 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f a1e795cdc853a760c783d88f99ad047f91650c02 > git rev-list a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: FAILURE

GitHub pull request #1020 of commit afc90d7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 06535d600e5829028e4dc12843d3f49eef091c22 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 06535d600e5829028e4dc12843d3f49eef091c22 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 06535d600e5829028e4dc12843d3f49eef091c22 > git rev-list a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1217/

Build result: FAILURE

GitHub pull request #1020 of commit afc90d7 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 06535d600e5829028e4dc12843d3f49eef091c22 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 06535d600e5829028e4dc12843d3f49eef091c22 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 06535d600e5829028e4dc12843d3f49eef091c22 > git rev-list a1e795cdc853a760c783d88f99ad047f91650c02 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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Test PASSed.
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Test PASSed.

Test PASSed.
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Test PASSed.

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Yahtzee!

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fnothaft commented Apr 28, 2016

Yahtzee!

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AmplabJenkins Apr 28, 2016

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1219/

Build result: FAILURE

GitHub pull request #1020 of commit 1d0ace9 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 > git rev-list 06535d600e5829028e4dc12843d3f49eef091c22 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1219/

Build result: FAILURE

GitHub pull request #1020 of commit 1d0ace9 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/1020/merge^{commit} # timeout=10 > git branch -a --contains 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 # timeout=10 > git rev-parse remotes/origin/pr/1020/merge^{commit} # timeout=10Checking out Revision 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 (origin/pr/1020/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 3f7fe5ee093b88fc2ec4a8d33b44b49e46ebe2b2 > git rev-list 06535d600e5829028e4dc12843d3f49eef091c22 # timeout=10Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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ryan-williams commented Apr 28, 2016

Jenkins, retest this please.

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AmplabJenkins Apr 28, 2016

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1220/
Test PASSed.

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1220/
Test PASSed.

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(Squashed commits)

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ryan-williams commented Apr 28, 2016

(Squashed commits)

@fnothaft fnothaft merged commit 1d0ace9 into bigdatagenomics:master Apr 28, 2016

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Thanks @ryan-williams for the stellar change and for the patience with @AmplabJenkins! I've just merged this.

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fnothaft commented Apr 28, 2016

Thanks @ryan-williams for the stellar change and for the patience with @AmplabJenkins! I've just merged this.

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