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add maxScore #1027

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@xubo245

xubo245 commented Apr 30, 2016

When we map reads to a ref,we need each read maxScore;Moreover ,a read maybe have many seed and each seed need extension,we need max score of eac extension in seed ,then we can take the high score in each max score in extension and decide the read mapping location in ref.
I add the maxScores function and lazy val maxScore

add maxScore
When we map reads to a ref,we need each read maxScore;Moreover ,a read maybe have many seed and each seed need extension,we need max score of eac extension in seed ,then we can take the high score in each max score in extension and decide the read mapping location in ref.
I add the maxScores function and lazy val maxScore
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AmplabJenkins Apr 30, 2016

Can one of the admins verify this patch?

AmplabJenkins commented Apr 30, 2016

Can one of the admins verify this patch?

change test to sparkTest
change test to sparkTest
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fnothaft Aug 31, 2016

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Closing as we've made the changed interfaces package private to ADAM.

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fnothaft commented Aug 31, 2016

Closing as we've made the changed interfaces package private to ADAM.

@fnothaft fnothaft closed this Aug 31, 2016

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