[ADAM-1124] Add Scoverage and generate coverage reports in Jenkins. #1125

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merged 1 commit into from Aug 25, 2016

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fnothaft commented Aug 24, 2016

Resolves #1124. H/T @ryan-williams, "If I have seen further, it is by standing on the shoulders of giants.", etc, etc. ;)

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1405/

Build result: FAILURE

GitHub pull request #1125 of commit c9a7053 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains cff1657 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision cff1657 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f cff16579aa5ae8fccde84bfd4134c5a6ee2b1bb4First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1405/

Build result: FAILURE

GitHub pull request #1125 of commit c9a7053 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains cff1657 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision cff1657 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f cff16579aa5ae8fccde84bfd4134c5a6ee2b1bb4First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
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Build result: FAILURE

GitHub pull request #1125 of commit f1b0251 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1406/

Build result: FAILURE

GitHub pull request #1125 of commit f1b0251 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 1f8aae0b7b6a4d6cdc891f9c45211e66fe169869First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Scoverage appears to only work on Scala 2.10.

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fnothaft commented Aug 24, 2016

Scoverage appears to only work on Scala 2.10.

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that is a bummer… i was going to try to 2.11 guacamole soon so can take a look again then :-\

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ryan-williams commented Aug 24, 2016

that is a bummer… i was going to try to 2.11 guacamole soon so can take a look again then :-\

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Actually, it says that scoverage supports Scala 2.11. I'm guessing this is an issue in the Maven plugin. I'll dig into this a bit more.

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fnothaft commented Aug 24, 2016

Actually, it says that scoverage supports Scala 2.11. I'm guessing this is an issue in the Maven plugin. I'll dig into this a bit more.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1407/

Build result: FAILURE

GitHub pull request #1125 of commit e7c94e4 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 089bc453c0bc2de99537271ab266ce73f19af2e7 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 089bc453c0bc2de99537271ab266ce73f19af2e7 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 089bc453c0bc2de99537271ab266ce73f19af2e7First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1407/

Build result: FAILURE

GitHub pull request #1125 of commit e7c94e4 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 089bc453c0bc2de99537271ab266ce73f19af2e7 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 089bc453c0bc2de99537271ab266ce73f19af2e7 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 089bc453c0bc2de99537271ab266ce73f19af2e7First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Actually, what I said about Scala 2.11 is completely wrong. The scala 2.11 build was running a-OK, scala 2.10 was failing.

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fnothaft commented Aug 24, 2016

Actually, what I said about Scala 2.11 is completely wrong. The scala 2.11 build was running a-OK, scala 2.10 was failing.

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...which is interesting, because I built on Scala 2.10.4 locally?

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fnothaft commented Aug 24, 2016

...which is interesting, because I built on Scala 2.10.4 locally?

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1408/

Build result: FAILURE

GitHub pull request #1125 of commit 4d9f4ff automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains a5259ad4c2234630e406b1955a76ca3d06ff3438 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision a5259ad4c2234630e406b1955a76ca3d06ff3438 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f a5259ad4c2234630e406b1955a76ca3d06ff3438First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1408/

Build result: FAILURE

GitHub pull request #1125 of commit 4d9f4ff automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains a5259ad4c2234630e406b1955a76ca3d06ff3438 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision a5259ad4c2234630e406b1955a76ca3d06ff3438 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f a5259ad4c2234630e406b1955a76ca3d06ff3438First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1409/

Build result: FAILURE

GitHub pull request #1125 of commit a18cb5c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains f59a3f4f7188f82b021494c29133eedd4ae00f48 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision f59a3f4f7188f82b021494c29133eedd4ae00f48 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f f59a3f4f7188f82b021494c29133eedd4ae00f48First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1409/

Build result: FAILURE

GitHub pull request #1125 of commit a18cb5c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains f59a3f4f7188f82b021494c29133eedd4ae00f48 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision f59a3f4f7188f82b021494c29133eedd4ae00f48 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f f59a3f4f7188f82b021494c29133eedd4ae00f48First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1410/

Build result: FAILURE

GitHub pull request #1125 of commit cf004e8 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1410/

Build result: FAILURE

GitHub pull request #1125 of commit cf004e8 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 1ae2d12afc00d8ef441d5dd60b2ba59b5846c1b9First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Build result: ABORTED

GitHub pull request #1125 of commit 8c6cb90 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 4bec69cb1400020a865618fd2207cda07b161c16 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 4bec69cb1400020a865618fd2207cda07b161c16 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 4bec69cb1400020a865618fd2207cda07b161c16First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosAbortedAborted by fnothaftInterrupting #1411Interrupting #1411Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
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Build result: ABORTED

GitHub pull request #1125 of commit 8c6cb90 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 4bec69cb1400020a865618fd2207cda07b161c16 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 4bec69cb1400020a865618fd2207cda07b161c16 (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 4bec69cb1400020a865618fd2207cda07b161c16First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosAbortedAborted by fnothaftInterrupting #1411Interrupting #1411Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Looks like the issue was scoverage/sbt-scoverage#86. I've just aborted the last run with this fix in. Hopefully, this is a go!

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fnothaft commented Aug 24, 2016

Looks like the issue was scoverage/sbt-scoverage#86. I've just aborted the last run with this fix in. Hopefully, this is a go!

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Build result: FAILURE

GitHub pull request #1125 of commit 7477a8c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 03b1a7d07473352633d60d3adacbe89925bf9c9b # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 03b1a7d07473352633d60d3adacbe89925bf9c9b (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 03b1a7d07473352633d60d3adacbe89925bf9c9bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1412/

Build result: FAILURE

GitHub pull request #1125 of commit 7477a8c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > /home/jenkins/git2/bin/git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1125/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains 03b1a7d07473352633d60d3adacbe89925bf9c9b # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1125/merge^{commit} # timeout=10Checking out Revision 03b1a7d07473352633d60d3adacbe89925bf9c9b (origin/pr/1125/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 03b1a7d07473352633d60d3adacbe89925bf9c9bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Fixed a typo I added to the jenkins-test script.

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fnothaft commented Aug 24, 2016

Fixed a typo I added to the jenkins-test script.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
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Build result: ABORTED

[...truncated 26 lines...]Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.3.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosAbortedAborted by fnothaftInterrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1413/

Build result: ABORTED

[...truncated 26 lines...]Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.3.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosAbortedAborted by fnothaftInterrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Interrupting #1413Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please.

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fnothaft commented Aug 24, 2016

Jenkins, retest this please.

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Test PASSed.
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Test PASSed.
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Jenkins, retest this please.

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fnothaft commented Aug 24, 2016

Jenkins, retest this please.

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Sweet! This works in Jenkins now; we get code coverage plots and all. The one caveat is that it only displays the adam-core coverage stats. The Jenkins Scoverage plugin only supports a single scoverage.xml file. We'll have to manually look at coverage for adam-apis and adam-cli, but this is a step in the right direction.

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fnothaft commented Aug 24, 2016

Sweet! This works in Jenkins now; we get code coverage plots and all. The one caveat is that it only displays the adam-core coverage stats. The Jenkins Scoverage plugin only supports a single scoverage.xml file. We'll have to manually look at coverage for adam-apis and adam-cli, but this is a step in the right direction.

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Test PASSed.
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Coverage data shows up on the pages that correspond to a specific version in our matrix, e.g., --> https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/

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fnothaft commented Aug 24, 2016

Coverage data shows up on the pages that correspond to a specific version in our matrix, e.g., --> https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/

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Ping for merge. Would be nice to get this in, so we can get coverage reported for all PRs afterwards...

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fnothaft commented Aug 25, 2016

Ping for merge. Would be nice to get this in, so we can get coverage reported for all PRs afterwards...

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This one will need a rebase after #1127; please let me know if perhaps I'm looking in the wrong place for the scoverage reports.

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heuermh commented Aug 25, 2016

This one will need a rebase after #1127; please let me know if perhaps I'm looking in the wrong place for the scoverage reports.

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@heuermh look at the build now: https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/

The coverage stats go away if the last build did not have a coverage report attached. This is what I see:

screen shot 2016-08-25 at 3 44 10 pm

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fnothaft commented Aug 25, 2016

@heuermh look at the build now: https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/

The coverage stats go away if the last build did not have a coverage report attached. This is what I see:

screen shot 2016-08-25 at 3 44 10 pm

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I see! The link on the left side of the page (Scoverage HTML Report) is what 404s.
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/scoverage

I don't see that as a problem with this pull request though, more some kind of Jenkins UI configuration or Jenkins plugin problem.

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heuermh commented Aug 25, 2016

I see! The link on the left side of the page (Scoverage HTML Report) is what 404s.
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=1.5.2,label=centos/scoverage

I don't see that as a problem with this pull request though, more some kind of Jenkins UI configuration or Jenkins plugin problem.

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I don't see that as a problem with this pull request though, more some kind of Jenkins UI configuration or Jenkins plugin problem.

Yeah, the Jenkins Scoverage plugin is... just OK. Not great, just OK.

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fnothaft commented Aug 25, 2016

I don't see that as a problem with this pull request though, more some kind of Jenkins UI configuration or Jenkins plugin problem.

Yeah, the Jenkins Scoverage plugin is... just OK. Not great, just OK.

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Test PASSed.
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LGTM

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heuermh commented Aug 25, 2016

LGTM

@heuermh heuermh merged commit daf5246 into bigdatagenomics:master Aug 25, 2016

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Merged as commit daf5246.

Thank you, @fnothaft, @ryan-williams!

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heuermh commented Aug 25, 2016

Merged as commit daf5246.

Thank you, @fnothaft, @ryan-williams!

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Thanks for merging, @heuermh! May our coverage forever increase.

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fnothaft commented Aug 25, 2016

Thanks for merging, @heuermh! May our coverage forever increase.

@fnothaft fnothaft deleted the fnothaft:issues/1124-coverage branch Aug 25, 2016

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