Add VCF headers for fields in Variant and VariantAnnotation records #1281

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heuermh commented Nov 18, 2016

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Test PASSed.
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Are we going to add the FORMAT keys as well, is that going to be a later PR, or are the htsjdk ones OK there?

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fnothaft commented Nov 18, 2016

Are we going to add the FORMAT keys as well, is that going to be a later PR, or are the htsjdk ones OK there?

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Standard FORMAT keys will come later, once we nail down the Genotype and GenotypeAnnotation schema. Although, if you want to whack the useless ones that are there currently . . . :)

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heuermh commented Nov 18, 2016

Standard FORMAT keys will come later, once we nail down the Genotype and GenotypeAnnotation schema. Although, if you want to whack the useless ones that are there currently . . . :)

@fnothaft fnothaft merged commit 4a4ff1e into bigdatagenomics:master Nov 18, 2016

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Standard FORMAT keys will come later, once we nail down the Genotype and GenotypeAnnotation schema. Although, if you want to whack the useless ones that are there currently . . . :)

I'll pick these up. PR coming shortly.

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fnothaft commented Nov 18, 2016

Standard FORMAT keys will come later, once we nail down the Genotype and GenotypeAnnotation schema. Although, if you want to whack the useless ones that are there currently . . . :)

I'll pick these up. PR coming shortly.

@heuermh heuermh deleted the heuermh:standard-headers branch Nov 18, 2016

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