Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Misc. INDEL realigner bugfixes #1382

Merged
merged 3 commits into from Feb 21, 2017
Merged

Conversation

@fnothaft
Copy link
Member

fnothaft commented Feb 5, 2017

No description provided.

@fnothaft fnothaft added this to the 0.21.1 milestone Feb 5, 2017
@AmplabJenkins
Copy link

AmplabJenkins commented Feb 5, 2017

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1773/
Test PASSed.

new RichAlignmentRecord(builder.build())
} catch {
case t: Throwable => {
println("Caught %s when trying to move alignment to %s for %s.".format(

This comment has been minimized.

Copy link
@heuermh

heuermh Feb 6, 2017

Member

use Logger here?

@heuermh
Copy link
Member

heuermh commented Feb 21, 2017

@fnothaft ping for logging fix

@fnothaft fnothaft force-pushed the fnothaft:known-flanks branch from f5e057f to 9316b0f Feb 21, 2017
@fnothaft
Copy link
Member Author

fnothaft commented Feb 21, 2017

Fixed logging and rebased.

@AmplabJenkins
Copy link

AmplabJenkins commented Feb 21, 2017

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1812/
Test PASSed.

@heuermh heuermh merged commit a6b2cdf into bigdatagenomics:master Feb 21, 2017
1 check passed
1 check passed
default Merged build finished.
Details
@heuermh
Copy link
Member

heuermh commented Feb 21, 2017

Thank you, @fnothaft

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Linked issues

Successfully merging this pull request may close these issues.

None yet

3 participants
You can’t perform that action at this time.