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Update to hadoop-bam 7.9.0 and htsjdk 2.11.0. #1678

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merged 3 commits into from Sep 26, 2017

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heuermh commented Aug 23, 2017

Tracking upcoming Hadoop-BAM version 7.8.1 release.

@heuermh heuermh referenced this pull request Aug 23, 2017

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Upgrade to htsjdk 2.11.0. #141

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coveralls Aug 23, 2017

Coverage Status

Coverage remained the same at 83.403% when pulling d61f9a9 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

coveralls commented Aug 23, 2017

Coverage Status

Coverage remained the same at 83.403% when pulling d61f9a9 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2325/
Test PASSed.

AmplabJenkins commented Aug 23, 2017

Test PASSed.
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Test PASSed.

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Coverage Status

Coverage remained the same at 83.403% when pulling fc42620 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

coveralls commented Aug 25, 2017

Coverage Status

Coverage remained the same at 83.403% when pulling fc42620 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2332/
Test PASSed.

AmplabJenkins commented Aug 25, 2017

Test PASSed.
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@heuermh heuermh added this to the 0.23.0 milestone Aug 30, 2017

@heuermh heuermh changed the title from Update to hadoop-bam 7.8.1-SNAPSHOT and htsjdk 2.11.0. to Update to hadoop-bam 7.9.0 and htsjdk 2.11.0. Sep 6, 2017

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Coverage Status

Coverage increased (+0.1%) to 83.548% when pulling 06ac986 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

coveralls commented Sep 6, 2017

Coverage Status

Coverage increased (+0.1%) to 83.548% when pulling 06ac986 on heuermh:hadoop-bam-7.8.1 into 9b51df5 on bigdatagenomics:master.

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Test PASSed.
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AmplabJenkins commented Sep 6, 2017

Test PASSed.
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Test PASSed.
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Test PASSed.

AmplabJenkins commented Sep 14, 2017

Test PASSed.
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@fnothaft fnothaft merged commit 9fadf53 into bigdatagenomics:master Sep 26, 2017

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codacy/pr Good work! A positive pull request.
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fnothaft Sep 26, 2017

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For whatever reason, this didn't get merged until now. Thanks @heuermh!

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fnothaft commented Sep 26, 2017

For whatever reason, this didn't get merged until now. Thanks @heuermh!

@heuermh heuermh deleted the heuermh:hadoop-bam-7.8.1 branch Sep 26, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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