[ADAM-1889] Run R/Python tests. #1890
Conversation
Resolves #1889.
mvn -U \ | ||
-P python,r \ | ||
package \ | ||
-DskipTests \ | ||
test \ |
heuermh
Jan 25, 2018
•
Member
I seem to recall skipping python tests was intentional?
Sorry, this was the thread I was mis-remembering...
https://gitter.im/bigdatagenomics/adam?at=5a01ec9d976e63937e3b5202
... which refers to #1800
I seem to recall skipping python tests was intentional?
Sorry, this was the thread I was mis-remembering...
https://gitter.im/bigdatagenomics/adam?at=5a01ec9d976e63937e3b5202
... which refers to #1800
akmorrow13
Jan 25, 2018
Contributor
Why would we want to skip python tests? This would result in merging broken code.
Why would we want to skip python tests? This would result in merging broken code.
fnothaft
Jan 26, 2018
Author
Member
Nope, not intentional, just a goof on my end.
Nope, not intentional, just a goof on my end.
Test FAILed. Build result: FAILURE[...truncated 7 lines...] > /home/jenkins/git2/bin/git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > /home/jenkins/git2/bin/git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1890/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 307fec4 # timeout=10Checking out Revision 307fec4 (origin/pr/1890/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 307fec48d25a927beb2179d3c7dea0052f139db1First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.3,2.11,2.2.1,centosTriggering ADAM-prb ? 2.6.2,2.10,2.2.1,centosTriggering ADAM-prb ? 2.7.3,2.10,2.2.1,centosTriggering ADAM-prb ? 2.6.2,2.11,2.2.1,centosADAM-prb ? 2.7.3,2.11,2.2.1,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,2.2.1,centos completed with result SUCCESSADAM-prb ? 2.7.3,2.10,2.2.1,centos completed with result SUCCESSADAM-prb ? 2.6.2,2.11,2.2.1,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
@fnothaft do you have residual code for python ReferenceRegion that wasn't merged or should we write this from scratch? |
Yeah, let me find it. I think it is on my Berkeley laptop. |
Closing in favor of #1892 |
Resolves #1889.
Let's see if this does it...