[ADAM-1939] Allow validation stringency to waive off FLAG arrays. #1940
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Test PASSed. |
@@ -482,14 +489,14 @@ class ADAMContextSuite extends ADAMFunSuite { | |||
sparkTest("load vcf with a glob") { | |||
val path = testFile("bqsr1.vcf").replace("bqsr1", "*") | |||
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val vcs = sc.loadVcf(path) | |||
val vcs = sc.loadVcf(path, stringency = ValidationStringency.LENIENT) |
heuermh
Mar 7, 2018
Member
Sorry to be a pain, could test files that are invalid be moved to a subdirectory so that the glob doesn't pick them up?
Sorry to be a pain, could test files that are invalid be moved to a subdirectory so that the glob doesn't pick them up?
fnothaft
Mar 7, 2018
Author
Member
+1, SGTM
+1, SGTM
Test PASSed. |
Thank you, @fnothaft |
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Resolves #1939.