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Clean up fields and doc in fragment. #2054

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merged 1 commit into from Nov 8, 2018

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heuermh commented Sep 20, 2018

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AmplabJenkins commented Sep 20, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2817/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2054/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains adf249b # timeout=10Checking out Revision adf249b (origin/pr/2054/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f adf249b1ed6510f49ef7295ff977abda34e4bccbFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result FAILUREADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@heuermh heuermh added this to the 0.25.0 milestone Nov 7, 2018

@heuermh heuermh force-pushed the heuermh:fragment-recordGroupName branch from 07d3c1a to 351edf2 Nov 7, 2018

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coveralls commented Nov 7, 2018

Coverage Status

Coverage decreased (-0.1%) to 79.066% when pulling 032e90a on heuermh:fragment-recordGroupName into 7111fd9 on bigdatagenomics:master.

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heuermh commented Nov 7, 2018

bdg-formats version 0.11.4 has been released, this pull request should be updated when it hits Maven Central.

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AmplabJenkins commented Nov 7, 2018

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2856/
Test PASSed.

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AmplabJenkins commented Nov 7, 2018

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2858/
Test PASSed.

@heuermh heuermh force-pushed the heuermh:fragment-recordGroupName branch from 0a5b705 to 032e90a Nov 7, 2018

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heuermh commented Nov 7, 2018

@akmorrow13 Rebased and ready to merge.

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AmplabJenkins commented Nov 8, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2859/

Build result: FAILURE

GitHub pull request #2054 of commit 032e90a automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2054/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 54875bb # timeout=10Checking out Revision 54875bb (origin/pr/2054/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 54875bb05abf2b4859fa7782c7e0e8cf2f5765fcFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.2.2,ubuntuADAM-prb ? 2.7.5,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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heuermh commented Nov 8, 2018

Jenkins, retest this please

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AmplabJenkins commented Nov 8, 2018

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2860/
Test PASSed.

@akmorrow13 akmorrow13 merged commit de21474 into bigdatagenomics:master Nov 8, 2018

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akmorrow13 commented Nov 8, 2018

thanks @heuermh!

@heuermh heuermh deleted the heuermh:fragment-recordGroupName branch Nov 8, 2018

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