New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update jenkins script to test python 3.6 #2060

Closed
wants to merge 5 commits into
base: master
from

Conversation

Projects
None yet
5 participants
@Georgehe4
Copy link
Contributor

Georgehe4 commented Oct 2, 2018

No description provided.

@AmplabJenkins

This comment has been minimized.

Copy link

AmplabJenkins commented Oct 2, 2018

Can one of the admins verify this patch?

@heuermh

This comment has been minimized.

Copy link
Member

heuermh commented Oct 2, 2018

Jenkins, test this please

@heuermh heuermh closed this Oct 2, 2018

@heuermh

This comment has been minimized.

Copy link
Member

heuermh commented Oct 2, 2018

Jenkins, add to whitelist

@heuermh heuermh reopened this Oct 2, 2018

@heuermh

This comment has been minimized.

Copy link
Member

heuermh commented Oct 2, 2018

Sorry about the close, hit the wrong button

@coveralls

This comment has been minimized.

Copy link

coveralls commented Oct 2, 2018

Coverage Status

Coverage remained the same at 79.13% when pulling d90ea3a on Georgehe4:python into cb11b43 on bigdatagenomics:master.

@AmplabJenkins

This comment has been minimized.

Copy link

AmplabJenkins commented Oct 2, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2825/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains edcff3a # timeout=10Checking out Revision edcff3a (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f edcff3aae5fa425103ff68f16a92ee77d5e5f957First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result FAILUREADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@AmplabJenkins

This comment has been minimized.

Copy link

AmplabJenkins commented Oct 2, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2826/

Build result: ABORTED

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 311e596 # timeout=10Checking out Revision 311e596 (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 311e596d5b414680ccc0c6b7188fc28d1756bd3dFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result ABORTEDADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result ABORTEDNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@AmplabJenkins

This comment has been minimized.

Copy link

AmplabJenkins commented Oct 15, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2829/

Build result: ABORTED

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 18b1a25 # timeout=10Checking out Revision 18b1a25 (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 18b1a25b38ddb45695b07d5130f50bcceedc34acFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result ABORTEDADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@akmorrow13

This comment has been minimized.

Copy link
Contributor

akmorrow13 commented Oct 16, 2018

@Georgehe4 Jenkins is failing with java.lang.OutOfMemoryError: Java heap space. Did you say you were getting a different local error?

@akmorrow13

This comment has been minimized.

Copy link
Contributor

akmorrow13 commented Oct 17, 2018

@Georgehe4 This is not specific to GenotypeRDD. I think there is a memory leak between test files.

@akmorrow13

This comment has been minimized.

Copy link
Contributor

akmorrow13 commented Oct 17, 2018

@akmorrow13 akmorrow13 closed this Oct 17, 2018

@heuermh heuermh added this to the 0.24.1 milestone Oct 17, 2018

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment