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Update jenkins script to test python 3.6 #2060

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@Georgehe4
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@Georgehe4 Georgehe4 commented Oct 2, 2018

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@AmplabJenkins
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@AmplabJenkins AmplabJenkins commented Oct 2, 2018

Can one of the admins verify this patch?

@heuermh
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@heuermh heuermh commented Oct 2, 2018

Jenkins, test this please

@heuermh heuermh closed this Oct 2, 2018
@heuermh
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@heuermh heuermh commented Oct 2, 2018

Jenkins, add to whitelist

@heuermh heuermh reopened this Oct 2, 2018
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@heuermh heuermh commented Oct 2, 2018

Sorry about the close, hit the wrong button

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@coveralls coveralls commented Oct 2, 2018

Coverage Status

Coverage remained the same at 79.13% when pulling d90ea3a on Georgehe4:python into cb11b43 on bigdatagenomics:master.

@AmplabJenkins
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@AmplabJenkins AmplabJenkins commented Oct 2, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2825/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains edcff3a # timeout=10Checking out Revision edcff3a (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f edcff3aae5fa425103ff68f16a92ee77d5e5f957First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result FAILUREADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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@AmplabJenkins AmplabJenkins commented Oct 2, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2826/

Build result: ABORTED

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 311e596 # timeout=10Checking out Revision 311e596 (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 311e596d5b414680ccc0c6b7188fc28d1756bd3dFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result ABORTEDADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result ABORTEDNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@AmplabJenkins
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@AmplabJenkins AmplabJenkins commented Oct 15, 2018

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2829/

Build result: ABORTED

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2060/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 18b1a25 # timeout=10Checking out Revision 18b1a25 (origin/pr/2060/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 18b1a25b38ddb45695b07d5130f50bcceedc34acFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.3,2.11,2.2.2,ubuntuTriggering ADAM-prb ? 2.6.2,2.11,2.2.2,ubuntuADAM-prb ? 2.7.3,2.11,2.2.2,ubuntu completed with result ABORTEDADAM-prb ? 2.6.2,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@akmorrow13
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@akmorrow13 akmorrow13 commented Oct 16, 2018

@Georgehe4 Jenkins is failing with java.lang.OutOfMemoryError: Java heap space. Did you say you were getting a different local error?

@akmorrow13
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@akmorrow13 akmorrow13 commented Oct 17, 2018

@Georgehe4 This is not specific to GenotypeRDD. I think there is a memory leak between test files.

@akmorrow13
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@akmorrow13 akmorrow13 commented Oct 17, 2018

@akmorrow13 akmorrow13 closed this Oct 17, 2018
@heuermh heuermh added this to the 0.24.1 milestone Oct 17, 2018
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5 participants