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[ADAM-2079] Expand illumina metadata regex to include "N" character #2081

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merged 1 commit into from Nov 7, 2018

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pauldwolfe commented Nov 7, 2018

Fixes #2079

Adds the "N" character to the regex to both the record converter and input format as they can be present in sample names (found a few inCOLO829 sample).
Also adjusts the test data to include an N in the sample name.

Paul Wolfe Paul Wolfe
Adds the "N" character to the regex to both the record converter and
input format as they can be present in sample names (found a few in
COLO829 sample). Also adjusts the test data to include an N in the
sample name.
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coveralls commented Nov 7, 2018

Coverage Status

Coverage remained the same at 79.206% when pulling ed965eb on pauldwolfe:illumina_metadata_fix into fc67969 on bigdatagenomics:master.

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AmplabJenkins commented Nov 7, 2018

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2854/
Test PASSed.

@heuermh heuermh added this to the 0.25.0 milestone Nov 7, 2018

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heuermh approved these changes Nov 7, 2018

@heuermh heuermh changed the title Expand illumina metadata regex to include "N" character [ADAM-2079] Expand illumina metadata regex to include "N" character Nov 7, 2018

@heuermh heuermh merged commit 1d50c71 into bigdatagenomics:master Nov 7, 2018

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heuermh commented Nov 7, 2018

Thank you, @pauldwolfe!

@pauldwolfe pauldwolfe deleted the pauldwolfe:illumina_metadata_fix branch Nov 7, 2018

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