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Few transform tweaks #434

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merged 2 commits into from Oct 29, 2014

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fnothaft commented Oct 24, 2014

Fixes #432 and #433. Puts BQSR after indel realignment and makes it possible to dump BQSR observations to a file.

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Test PASSed.
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AmplabJenkins commented Oct 24, 2014

Test PASSed.
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fnothaft Oct 26, 2014

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Rebased.

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fnothaft commented Oct 26, 2014

Rebased.

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Test PASSed.
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AmplabJenkins commented Oct 26, 2014

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/316/
Test PASSed.

tdanford added a commit that referenced this pull request Oct 29, 2014

@tdanford tdanford merged commit 854fc38 into bigdatagenomics:master Oct 29, 2014

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