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read “OQ” attr from structured SAMRecord field #449

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merged 1 commit into from Nov 1, 2014

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ryan-williams commented Oct 31, 2014

converting into and out of BAM using ADAM was dropping the “OQ” attr;
HTSJDK puts it in its own field but ADAM was looking for it in the
catch-all attributes field.

read “OQ” attr from structured SAMRecord field
converting into and out of BAM using ADAM was dropping the “OQ” attr;
HTSJDK puts it in its own field but ADAM was looking for it in the
catch-all attributes field.
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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/337/
Test PASSed.

AmplabJenkins commented Oct 31, 2014

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/337/
Test PASSed.

massie added a commit that referenced this pull request Nov 1, 2014

Merge pull request #449 from ryan-williams/origqual
read “OQ” attr from structured SAMRecord field

@massie massie merged commit d7d2450 into bigdatagenomics:master Nov 1, 2014

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massie Nov 1, 2014

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Thanks, Ryan!

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massie commented Nov 1, 2014

Thanks, Ryan!

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