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[ADAM-583] Add k-mer counting functionality for nucleotide contig fragments #584

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merged 1 commit into from Feb 23, 2015

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fnothaft commented Feb 21, 2015

Resolves #583. This steals some code from bigdatagenomics/avocado#127 that adds flanking sequence to adjacent fragments. Without adding the adjacent sequence, we won't get correct values.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/606/
Test PASSed.

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/606/
Test PASSed.

massie added a commit that referenced this pull request Feb 23, 2015

Merge pull request #584 from fnothaft/fasta-kmer-counting
[ADAM-583] Add k-mer counting functionality for nucleotide contig fragments

@massie massie merged commit 293407f into bigdatagenomics:master Feb 23, 2015

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massie Feb 23, 2015

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Thanks, Frank!

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massie commented Feb 23, 2015

Thanks, Frank!

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