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Bug fix in ReferenceUtils.unionReferenceSet #671

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merged 2 commits into from May 4, 2015

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tmoerman commented May 4, 2015

  • fixed pattern matching bug in ReferenceUtils.unionReferenceSet
  • added test suite ReferenceUtilsSuite
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AmplabJenkins May 4, 2015

Can one of the admins verify this patch?

Can one of the admins verify this patch?

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Jenkins, add to whitelist and test this please.

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fnothaft commented May 4, 2015

Jenkins, add to whitelist and test this please.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/700/

Build result: FAILURE

GitHub pull request #671 of commit 3eb895c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/671/merge^{commit} # timeout=10 > git branch -a --contains 6dacb435c13f2e40be5b93f2bb70b7454d5c1602 # timeout=10 > git rev-parse remotes/origin/pr/671/merge^{commit} # timeout=10Checking out Revision 6dacb435c13f2e40be5b93f2bb70b7454d5c1602 (origin/pr/671/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6dacb435c13f2e40be5b93f2bb70b7454d5c1602First time build. Skipping changelog.Triggering ADAM-prb ? 1.0.4,centosTriggering ADAM-prb ? 2.2.0,centosTriggering ADAM-prb ? 2.3.0,centosADAM-prb ? 1.0.4,centos completed with result FAILUREADAM-prb ? 2.2.0,centos completed with result FAILUREADAM-prb ? 2.3.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/700/

Build result: FAILURE

GitHub pull request #671 of commit 3eb895c automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/671/merge^{commit} # timeout=10 > git branch -a --contains 6dacb435c13f2e40be5b93f2bb70b7454d5c1602 # timeout=10 > git rev-parse remotes/origin/pr/671/merge^{commit} # timeout=10Checking out Revision 6dacb435c13f2e40be5b93f2bb70b7454d5c1602 (origin/pr/671/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6dacb435c13f2e40be5b93f2bb70b7454d5c1602First time build. Skipping changelog.Triggering ADAM-prb ? 1.0.4,centosTriggering ADAM-prb ? 2.2.0,centosTriggering ADAM-prb ? 2.3.0,centosADAM-prb ? 1.0.4,centos completed with result FAILUREADAM-prb ? 2.2.0,centos completed with result FAILUREADAM-prb ? 2.3.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/701/
Test PASSed.

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/701/
Test PASSed.

fnothaft added a commit that referenced this pull request May 4, 2015

Merge pull request #671 from tmoerman/master
Bug fix in ReferenceUtils.unionReferenceSet

@fnothaft fnothaft merged commit 9013336 into bigdatagenomics:master May 4, 2015

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Merged! Thanks @tmoerman!

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fnothaft commented May 4, 2015

Merged! Thanks @tmoerman!

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happy to help :)

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tmoerman commented May 4, 2015

happy to help :)

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