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adding --version command line option #888

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heuermh commented Nov 24, 2015

For snapshot builds:

$ ./bin/adam-submit --version
Using ADAM_MAIN=org.bdgenomics.adam.cli.ADAMMain
Using SPARK_SUBMIT=/usr/local/bin/spark-submit

       e         888~-_          e             e    e
      d8b        888   \        d8b           d8b  d8b
     /Y88b       888    |      /Y88b         d888bdY88b
    /  Y88b      888    |     /  Y88b       / Y88Y Y888b
   /____Y88b     888   /     /____Y88b     /   YY   Y888b
  /      Y88b    888_-~     /      Y88b   /          Y888b

ADAM version: 0.18.3-SNAPSHOT
Commit: 704d2ccd6eaad2e856fdec2d5ed2395edef98c04 Build: 2015-11-24
Built for: Scala 2.11 and Hadoop 2.2.0

For release versions:

$ adam-submit --version
Using ADAM_MAIN=org.bdgenomics.adam.cli.ADAMMain
Using SPARK_SUBMIT=/usr/local/bin/spark-submit

       e         888~-_          e             e    e
      d8b        888   \        d8b           d8b  d8b
     /Y88b       888    |      /Y88b         d888bdY88b
    /  Y88b      888    |     /  Y88b       / Y88Y Y888b
   /____Y88b     888   /     /____Y88b     /   YY   Y888b
  /      Y88b    888_-~     /      Y88b   /          Y888b

ADAM version: 0.18.3
Built for: Scala 2.11 and Hadoop 2.2.0

Any properties available to Maven via pom.xml could be added. I also fixed the kerning with our logo.

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Hold up, I'm missing the license header but messed up my local git repo. Might take a bit before I can rebase.

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heuermh commented Nov 24, 2015

Hold up, I'm missing the license header but messed up my local git repo. Might take a bit before I can rebase.

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Test PASSed.
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Test PASSed.

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Test FAILed.
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Build result: FAILURE

GitHub pull request #888 of commit 9fda722 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains b14d5c82ca6b1b828ae68a846787add6b3488d8a # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision b14d5c82ca6b1b828ae68a846787add6b3488d8a (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f b14d5c82ca6b1b828ae68a846787add6b3488d8aFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

AmplabJenkins commented Nov 24, 2015

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
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Build result: FAILURE

GitHub pull request #888 of commit 9fda722 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains b14d5c82ca6b1b828ae68a846787add6b3488d8a # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision b14d5c82ca6b1b828ae68a846787add6b3488d8a (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f b14d5c82ca6b1b828ae68a846787add6b3488d8aFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Show outdated Hide outdated pom.xml
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.bdgenomics.adam.cli;

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fnothaft Nov 24, 2015

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Doth this need to be in Java?

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fnothaft Nov 24, 2015

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Doth this need to be in Java?

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fnothaft Nov 24, 2015

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Oh, nevermind. I think I get it now.

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fnothaft Nov 24, 2015

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Oh, nevermind. I think I get it now.

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Also, can we add unit tests for this file? I feel a bit weird suggesting this for a template file, but I feel like we'll accidentally break the connection between this file and the POM if we don't have unit tests.

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Also, can we add unit tests for this file? I feel a bit weird suggesting this for a template file, but I feel like we'll accidentally break the connection between this file and the POM if we don't have unit tests.

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heuermh Dec 11, 2015

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Thanks, added unit tests and rebased.

This needs to be in java only because I don't know of an equivalent templating maven plugin for scala. We could add other build variables, including perhaps all those used in the buildinfo command (issue #880).

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heuermh Dec 11, 2015

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Thanks, added unit tests and rebased.

This needs to be in java only because I don't know of an equivalent templating maven plugin for scala. We could add other build variables, including perhaps all those used in the buildinfo command (issue #880).

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1022/

Build result: FAILURE

GitHub pull request #888 of commit a8c1467 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains 865cd1e # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision 865cd1e (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 865cd1e > git rev-list b14d5c82ca6b1b828ae68a846787add6b3488d8a # timeout=10Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

AmplabJenkins commented Nov 24, 2015

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1022/

Build result: FAILURE

GitHub pull request #888 of commit a8c1467 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains 865cd1e # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision 865cd1e (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 865cd1e > git rev-list b14d5c82ca6b1b828ae68a846787add6b3488d8a # timeout=10Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please

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heuermh commented Nov 24, 2015

Jenkins, retest this please

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Test PASSed.
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Test PASSed.

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Test PASSed.
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Jenkins, retest this please

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heuermh commented Dec 4, 2015

Jenkins, retest this please

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1026/

Build result: FAILURE

GitHub pull request #888 of commit a8c1467 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains c72865a # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision c72865a (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c72865a > git rev-list 865cd1e # timeout=10Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

AmplabJenkins commented Dec 4, 2015

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1026/

Build result: FAILURE

GitHub pull request #888 of commit a8c1467 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/888/merge^{commit} # timeout=10 > git branch -a --contains c72865a # timeout=10 > git rev-parse remotes/origin/pr/888/merge^{commit} # timeout=10Checking out Revision c72865a (origin/pr/888/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c72865a > git rev-list 865cd1e # timeout=10Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Jenkins, retest this please

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heuermh commented Dec 4, 2015

Jenkins, retest this please

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Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1027/
Test PASSed.

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Test PASSed.
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Test PASSed.

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Thanks @heuermh! Rebased and merged as 94e92dd.

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fnothaft commented Dec 12, 2015

Thanks @heuermh! Rebased and merged as 94e92dd.

@fnothaft fnothaft closed this Dec 12, 2015

@heuermh heuermh deleted the heuermh:version branch Dec 12, 2015

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heuermh Dec 12, 2015

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Thanks!

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heuermh commented Dec 12, 2015

Thanks!

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