Skip to content
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
scripts Increase Avro dependency version to 1.8.0 (#78) May 5, 2016
src/main/resources/avro Update AlignmentRecord field docs with mappings to SAM spec where app… Jan 12, 2019
.gitignore Adding IntelliJ files to the .gitignore Jul 13, 2014
CHANGES.md Updating CHANGES.md. Feb 20, 2019
CODE_OF_CONDUCT.md Adding code of contact adapted from the Contributor Convenant, versio… Oct 26, 2017
CONTRIBUTING.md Adds contribution file and updates the license header on the AVDL file. Jun 26, 2014
KEYS Adding key signatures for artifact signers. (#86) Jun 27, 2016
LICENSE.txt
README.md Adding API documentation link and badge. May 2, 2018
pom.xml [maven-release-plugin] prepare for next development iteration Feb 20, 2019

README.md

bdg-formats

Build Status Maven Central API Documentation

Summary

Big Data Genomics (BDG) bdg-formats provides Apache Avro schema for genomic data such as aligned reads, variants, and genotypes. The schema are used to generate a library of Java code used by downstream projects such as ADAM, Avocado, Quinine, and Mango.

Using bdg-formats

Add the following dependency to your Maven build:

<dependency>
  <groupId>org.bdgenomics.bdg-formats</groupId>
  <artifactId>bdg-formats</artifactId>
  <version>${version}</version>
</dependency>

Building bdg-formats

Install Apache Maven version 3.3.3 or later.

$ mvn package

License

bdg-formats is released under an Apache 2.0 license.

You can’t perform that action at this time.