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Error running BWA with Docker #103
I'm trying to run
Note, I aded below "#### bwaCommand" to print out that value.
I get the error that the docker command is badly formed and doesn't know about "--rm":
which is the same error I get if I try to run manually
There may be also an issue that I should be using abosulte paths, but I think that is downstream.
That's a fairly old version of Docker.
From the manual
It installs via homebrew on Mac for me