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[CANNOLI-111] Adding Minimap2 for alignment. #119

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merged 1 commit into from Apr 19, 2018

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heuermh commented Mar 23, 2018

Fixes #111.

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AmplabJenkins commented Mar 23, 2018

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins//job/cannoli-prb/131/
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@heuermh heuermh requested a review from fnothaft Mar 23, 2018

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heuermh commented Mar 23, 2018

@fnothaft Minimap2 supports a lot of use cases without paired reads, should we be using Fragments here?

@heuermh heuermh added this to the 0.3.0 milestone Mar 27, 2018

@heuermh heuermh force-pushed the heuermh:minimap2 branch from 22c4953 to b5f9be5 Apr 19, 2018

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AmplabJenkins commented Apr 19, 2018

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/cannoli-prb/138/
Test PASSed.

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coveralls commented Apr 19, 2018

Coverage Status

Coverage decreased (-0.6%) to 19.556% when pulling fa02b6b on heuermh:minimap2 into 7b4a803 on bigdatagenomics:master.

@heuermh heuermh force-pushed the heuermh:minimap2 branch from b5f9be5 to fa02b6b Apr 19, 2018

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AmplabJenkins commented Apr 19, 2018

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/cannoli-prb/139/
Test PASSed.

@heuermh heuermh merged commit d28eb01 into bigdatagenomics:master Apr 19, 2018

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@heuermh heuermh deleted the heuermh:minimap2 branch Apr 19, 2018

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