From dfb220c31e51070afbc0104dcdee9041e5e9469a Mon Sep 17 00:00:00 2001 From: Eudes Barbosa Date: Fri, 11 Nov 2022 15:34:19 +0100 Subject: [PATCH] Added genome release to config --- snappy_pipeline/workflows/targeted_seq_cnv_export/__init__.py | 1 + 1 file changed, 1 insertion(+) diff --git a/snappy_pipeline/workflows/targeted_seq_cnv_export/__init__.py b/snappy_pipeline/workflows/targeted_seq_cnv_export/__init__.py index 172f89614..1026f6dde 100644 --- a/snappy_pipeline/workflows/targeted_seq_cnv_export/__init__.py +++ b/snappy_pipeline/workflows/targeted_seq_cnv_export/__init__.py @@ -83,6 +83,7 @@ path_targeted_seq_cnv_annotation: ../targeted_seq_cnv_annotation tools_ngs_mapping: null tools_targeted_seq_cnv_calling: null + release: GRCh37 # OPTIONAL: default 'GRCh37' path_refseq_ser: REQUIRED # REQUIRED: path to RefSeq .ser file path_ensembl_ser: REQUIRED # REQUIRED: path to ENSEMBL .ser file path_db: REQUIRED # REQUIRED: spath to annotator DB file to use