From f5df65bf988ab8560efbf8995ed18b2706d63388 Mon Sep 17 00:00:00 2001 From: Eric Blanc Date: Fri, 2 Sep 2022 13:34:53 +0200 Subject: [PATCH] Simplify test --- .../workflows/test_workflows_ngs_mapping.py | 12 +++--------- 1 file changed, 3 insertions(+), 9 deletions(-) diff --git a/tests/snappy_pipeline/workflows/test_workflows_ngs_mapping.py b/tests/snappy_pipeline/workflows/test_workflows_ngs_mapping.py index f932f5f03..9305dad65 100644 --- a/tests/snappy_pipeline/workflows/test_workflows_ngs_mapping.py +++ b/tests/snappy_pipeline/workflows/test_workflows_ngs_mapping.py @@ -551,15 +551,9 @@ def test_gatk_post_bam_step_part_get_output_files(ngs_mapping_workflow): def test_gatk_post_bam_step_part_get_log_file(ngs_mapping_workflow): """Tests GatkPostBamStepPart.get_log_file()""" - base_name_out = "work/{mapper}.{library_name}/log/gatk_post_bam.{library_name}" - expected = { - "log": base_name_out + ".log", - "log_md5": base_name_out + ".log.md5", - "conda_info": base_name_out + ".conda_info.txt", - "conda_info_md5": base_name_out + ".conda_info.txt.md5", - "conda_list": base_name_out + ".conda_list.txt", - "conda_list_md5": base_name_out + ".conda_list.txt.md5", - } + expected = get_expected_log_files_dict( + base_out="work/{mapper}.{library_name}/log/gatk_post_bam.{library_name}" + ) actual = ngs_mapping_workflow.get_log_file("gatk_post_bam", "run") assert actual == expected