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WGS SV Calling: make Delly perform per family calls only #189

Merged
merged 2 commits into from
Sep 6, 2022
Merged

WGS SV Calling: make Delly perform per family calls only #189

merged 2 commits into from
Sep 6, 2022

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holtgrewe
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@holtgrewe holtgrewe linked an issue Aug 28, 2022 that may be closed by this pull request
Make delly perform per-family calls only #188
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@holtgrewe holtgrewe marked this pull request as draft August 28, 2022 10:26
@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch from 6f8ef0f to caddc00 Compare August 28, 2022 10:37
@eudesbarbosa eudesbarbosa mentioned this pull request Aug 29, 2022
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eudesbarbosa added a commit that referenced this pull request Sep 1, 2022
@eudesbarbosa
Adjust workflow to changes in #189
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eudesbarbosa added a commit that referenced this pull request Sep 2, 2022
@eudesbarbosa
Adjust workflow to changes in #189
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@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch from 35661c1 to 08dfd3b Compare September 5, 2022 11:39
@eudesbarbosa eudesbarbosa changed the title 188 make delly perform per family calls only WGS SV Calling: make Delly perform per family calls only Sep 5, 2022
eudesbarbosa
eudesbarbosa reviewed Sep 5, 2022
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I commented some optional cosmetic changes. Pending unit tests fixes.

snappy_pipeline/workflows/wgs_sv_export/__init__.py Outdated Show resolved Hide resolved
snappy_pipeline/workflows/wgs_sv_export/__init__.py Outdated Show resolved Hide resolved
snappy_wrappers/wrappers/delly2/germline/merge_genotypes/wrapper.py Outdated Show resolved Hide resolved
@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch 2 times, most recently from f180d3e to 50aae28 Compare September 5, 2022 12:51
@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch from 50aae28 to f42f96c Compare September 5, 2022 12:53
@holtgrewe holtgrewe marked this pull request as ready for review September 5, 2022 12:53
@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch 3 times, most recently from 4cce573 to a5bf4be Compare September 5, 2022 14:22
@holtgrewe holtgrewe force-pushed the 188-make-delly-perform-per-family-calls-only branch from a5bf4be to 62d6e24 Compare September 6, 2022 06:48
@holtgrewe holtgrewe merged commit 5c77a12 into master Sep 6, 2022
@holtgrewe holtgrewe deleted the 188-make-delly-perform-per-family-calls-only branch September 6, 2022 09:12
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@eudesbarbosa eudesbarbosa eudesbarbosa approved these changes

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Make delly perform per-family calls only
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@holtgrewe @eudesbarbosa