From 602dc7b46f838f682240779b8ecd4833da38f369 Mon Sep 17 00:00:00 2001
From: Mikko Nieminen <mikko.nieminen@bih-charite.de>
Date: Wed, 23 Aug 2023 10:14:44 +0200
Subject: [PATCH] add sheet template boolean field support (wip) (#1757)

---
 config/settings/base.py | 1 +
 requirements/base.txt   | 2 +-
 samplesheets/forms.py   | 8 ++++----
 3 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/config/settings/base.py b/config/settings/base.py
index 8b6694e8..e333b503 100644
--- a/config/settings/base.py
+++ b/config/settings/base.py
@@ -786,6 +786,7 @@ def set_logging(level=None):
 # HACK: Supported cubi-tk templates, excluding ones which altamISA cannot parse
 SHEETS_ENABLED_TEMPLATES = [
     'bulk_rnaseq',
+    'cancer',
     'generic',
     'germline',
     'mass_cytometry',
diff --git a/requirements/base.txt b/requirements/base.txt
index dc7f5340..18c036b6 100644
--- a/requirements/base.txt
+++ b/requirements/base.txt
@@ -102,7 +102,7 @@ pronto==2.5.0  # For OWL conversion
 
 # CUBI ISA-Tab templates
 cookiecutter==2.2.3
--e git+https://github.com/bihealth/cubi-isa-templates.git@71fab2ba637f9b00920b6d69d328e5ab1d1ef1e4#egg=cubi-isa-templates
+-e git+https://github.com/bihealth/cubi-isa-templates.git@c4139e147fd5db10bd6478460edbbce157abe425#egg=cubi-isa-templates
 
 # Taskflow requirements
 tooz==3.0.0
diff --git a/samplesheets/forms.py b/samplesheets/forms.py
index db47f30d..35888e17 100644
--- a/samplesheets/forms.py
+++ b/samplesheets/forms.py
@@ -278,6 +278,10 @@ def __init__(
                 if not all(v):  # Allow empty value if in options
                     field_kwargs['required'] = False
                 self.fields[k] = forms.ChoiceField(**field_kwargs)
+            elif isinstance(v, bool):
+                field_kwargs['required'] = False
+                self.fields[k] = forms.BooleanField(**field_kwargs)
+                self.initial[k] = v
             elif isinstance(v, dict):
                 field_kwargs['widget'] = forms.Textarea(
                     {'class': 'sodar-json-input'}
@@ -313,10 +317,6 @@ def save(self):
         for k in self.json_fields:
             if not isinstance(extra_context[k], dict):
                 extra_context[k] = json.loads(extra_context[k])
-        if 'is_triplet' in self.sheet_tpl.configuration:
-            extra_context['is_triplet'] = self.sheet_tpl.configuration[
-                'is_triplet'
-            ]
 
         with tempfile.TemporaryDirectory() as td:
             cookiecutter(