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rInstantCorrection

MATLAB code (and accompanying figures) for correcting errors incurred in renewal equation estimation of instantaneous reproduction number.

We split this project into two sub-directories, 'Functions' and 'Simulation_Approach'.

In 'Functions', we list all the code for the MATLAB functions used within the project.

In 'Simulation_Approach', we have six sub-directories: 'Cluster', 'Scripts', 'RealWorldData', 'SchematicsAndFigures' and 'EMComparison', which have brief descriptions below:

'Cluster': Files used requiring SLURM/ Computer cluster 'Scripts': Scripts used to produce figures in manuscripts 'RealWorldData': Data files used throughout analysis 'SchematicsAndFigures': All schematics and figures (non code-based) and their derivations used in manuscripts 'EMComparison': File for analysis comparing with Expectation-Maximisation method (Nash et al.)

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MATLAB code (and accompanying figures) for correcting errors incurred in renewal equation estimation of instantaneous reproduction number

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