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Database cleanup moved to :haai_distances

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lmrodriguezr committed Dec 8, 2018
1 parent 9705438 commit a2d6cd6f6f9df34461dcb645a460cd5b0a344274
Showing with 4 additions and 3 deletions.
  1. +0 −3 scripts/clade_finding.bash
  2. +4 −0 scripts/haai_distances.bash
@@ -11,9 +11,6 @@ cd "$PROJECT/data/10.clades/01.find"
# Initialize
miga date > "miga-project.start"

# Cleanup databases
ruby -I "$MIGA/lib" "$MIGA/utils/cleanup-databases.rb" "$PROJECT" "$CORES"

# Run
ruby -I "$MIGA/lib" "$MIGA/utils/subclades.rb" "$PROJECT" "$SCRIPT"

@@ -11,6 +11,10 @@ cd "$PROJECT/data/09.distances/01.haai"
# Initialize
miga date > "miga-project.start"

# Cleanup databases
ruby -I "$MIGA/lib" "$MIGA/utils/cleanup-databases.rb" "$PROJECT" "$CORES"

# Run hAAI
echo -n "" > miga-project.log
DS=$(miga ls -P "$PROJECT" --ref --no-multi --active)

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