@bio-ontology-research-group

Bio-Ontology Research Group

Bio-Ontology Research Group at KAUST

Pinned repositories

  1. deepgo

    Function prediction using a deep ontology-aware classifier

    Python 9 5

  2. phenomenet-vp

    A phenotype-based tool for variant prioritization in WES and WGS data

    Java 5 1

  3. walking-rdf-and-owl

    Feature learning over RDF data and OWL ontologies

    Groovy 9 4

  4. phenomeblast

    Source for PhenomeNET and related projects

    Groovy

  5. opa2vec

    Turning Ontologies Plus Annotation Properties into Vectors

    Groovy 1 2

  6. ontology-tutorial

    Ontology Tutorial at ISMB 2018

    TeX 10 4

  • JavaScript Updated Sep 19, 2018
  • Turning Ontologies Plus Annotation Properties into Vectors

    Groovy 1 2 GPL-3.0 Updated Sep 18, 2018
  • SPARQL Endpoint with functions for computing embedding similarities

    Java Updated Sep 17, 2018
  • RDF graph for the PPI

    Updated Aug 29, 2018
  • Python Updated Aug 15, 2018
  • Method for drug repurposing from knowledge graphs and literature

    Python Updated Aug 15, 2018
  • Feature learning over RDF data and OWL ontologies

    Groovy 9 4 Updated Aug 13, 2018
  • this repsoitory contanst data ns scripts to evaluate similarity between gene-phenotypes and disease phenotypes on the MGI gene-disease datasets

    Groovy Updated Aug 6, 2018
  • A phenotype-based tool for variant prioritization in WES and WGS data

    Java 5 1 Updated Aug 2, 2018
  • Python Updated Aug 1, 2018
  • Code used to evaluate combinations of MPATH and MA

    Groovy Updated Jul 31, 2018
  • Function prediction using a deep ontology-aware classifier

    Python 9 5 Updated Jul 22, 2018
  • Groovy 1 Updated Jul 19, 2018
  • JavaScript Updated Jul 16, 2018
  • SmuDGE: Semantic Disease Gene Embeddings

    Python 1 1 Updated Jul 11, 2018
  • Ontology Tutorial at ISMB 2018

    TeX 10 4 CC-BY-4.0 Updated Jul 6, 2018
  • Updated Jul 3, 2018
  • C++ Updated Jun 25, 2018
  • Source for PhenomeNET and related projects

    Groovy Updated May 17, 2018
  • Groovy 1 Updated May 16, 2018
  • Representation learning for ontologies and their annotations

    Groovy 1 1 BSD-2-Clause Updated Apr 30, 2018
  • Materials for the ECCB Tutorial on learning with structured data

    TeX Updated Apr 19, 2018
  • Ontology enrichment analysis over any OWL ontology

    C++ 2 Updated Apr 17, 2018
  • Ontology-Based Concept Recognition by Using Word Embeddings

    Python BSD-2-Clause Updated Apr 14, 2018
  • HTML Updated Mar 25, 2018
  • An ontology of units of measurements

    Groovy 5 2 Updated Mar 20, 2018
  • Learning ontology class representations in text

    HTML 2,882 Updated Mar 20, 2018
  • Python Updated Feb 8, 2018
  • Method to predict phenotypes from functions

    Groovy 1 Updated Jan 29, 2018
  • Generating ontology class embeddings from PubMed abstracts

    Python Updated Jan 13, 2018