GAD

A Python script for extracting genome features from GTF/GFF3

Requirements

1. Python

Download and install any version of python from the main website (https://www.python.org/)

NOTE: make sure that your processor architecture (32-bit or 64-bit) in your device is compatible with python

2. Tkinter

For linux:

If Python version 2, open the terminal and write: sudo apt-get install python-tk

If Python version 3, open the terminal and write: sudo apt-get install python3-tk

NOTE: In windows, the Tkinter module included by default in the python package

Run GAD

1. For linux:

If Python version 2, open the terminal and write: python

If Python version 3, open the terminal and write: python3

Then after ">>>" mark write: execfile("path/to/GAD_v0.4.py")

2. For windows:

Write IDLE in the search bar and open the IDLE, then after ">>>" mark write: execfile("path/to/GAD_v0.4.py")

NOTE: Replace "path/to/" with the current path of "GAD_v0.4.py" on your computer

Support

Send your problems at : ahmedkaramak.ak@gmail.com

Cite Us

Yasser, N., Karam, A. GAD: A Python Script for Dividing Genome Annotation Files into Feature-Based Files. Interdiscip Sci Comput Life Sci (2020). https://doi.org/10.1007/s12539-020-00378-4