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Publications

Palmblad, M., Lamprecht, A-L, Ison, J. and Schwammle, V. (2018) Automated workflow composition in mass spectrometry based proteomics Bioinformatics doi:10.1093/bioinformatics/bty646

Hillion K.H., Kuzmin I., Khodak A., Rasche E., Crusoe M., Peterson H., Ison J., Ménager, H. (2017). Using bio.tools to generate and annotate workbench tool descriptions F1000Research (article). doi:10.12688/f1000research.12974.1

Doppelt-Azeroual, O., Mareuil, F., Deveaud, Kalaš, M., Soranzo, N., van den Beek, M., Grüning, B., Ison, J. and Ménager, H. (2017). ReGaTE: Registration of Galaxy Tools in Elixir GigaScience, doi:10.1093/gigascience/gix022

Ménager, H., Kalaš, M., Rapacki, K. and Ison, J. (2016). Using registries to integrate bioinformatics tools and services into workbench environments Int J Softw Tools Technol Transfer, doi:10.1007/s10009-015-0392-z

Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, doi: 10.1093/nar/gkv1116

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113

Citation

If you use bio.tools, please cite:

Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. doi: 10.1093/nar/gkv1116

If you use EDAM or its part, please cite:

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113