Skip to content
Serializes text-mined miRNA-target interactions to BEL
Python Dockerfile
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
docs
src/bio2bel_mirtarbase
tests
.bumpversion.cfg
.coveragerc
.flake8
.gitignore
.readthedocs.yml
.travis.yml
Dockerfile
LICENSE
MANIFEST.in
README.rst
doc8.ini
docker-compose.yml
setup.py
tox.ini

README.rst

Bio2BEL miRTarBase Build Status Coverage Status Documentation Status Zenodo DOI

Serializes text-mined miRNA-target interactions to BEL

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_mirtarbase can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_mirtarbase

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/mirtarbase.git@master

Setup

miRTarBase can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_mirtarbase
>>> mirtarbase_manager = bio2bel_mirtarbase.Manager()
>>> mirtarbase_manager.populate()

Command Line Utility

bio2bel_mirtarbase populate

Citations

  • Chih-Hung Chou, et al; miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. Nucleic Acids Res 2016; 44 (D1): D239-D247. doi: 10.1093/nar/gkv1258

Links

You can’t perform that action at this time.