ideas

Eduardo Pareja-Tobes edited this page Feb 26, 2014 · 11 revisions

This is the list of ideas that we propose; this does not mean that you are forced to choose from this list: the first idea is just your own! we are extremely happy to discuss any potential ideas/projects around bio4j that you could have.

You can also browse and filter this list (based in difficulty and technologies involved) using the issues in this repository.

ideas list

  1. your own idea!
    • difficulty ??
    • technologies ??
  2. DynamoDB backed bio4j prototype
    • difficulty hard
    • technologies scala, aws, blueprints, aws, dynamodb, s3, ec2
  3. AWS based bio4j specific CI platform
    • difficulty hard
    • technologies scala, sbt, java, aws, s3, ec2, git
  4. incorporate range based data into bio4j
    • difficulty hard
    • technologies scala, blueprints, biology, data structures
  5. apply advanced Scala techniques to bio4j
    • difficulty hard
    • technologies scala, blueprints, titan
  6. integrate sequence data into bio4j
    • difficulty medium
    • technologies aws, s3, dynamodb, biology, scala
  7. cloud based query benchmarking suite
    • difficulty medium
    • technologies scala, java, titan, neo4j, blueprints, gremlin, cypher, aws, biology, datavis
  8. OrientDB based bio4j distribution
    • difficulty medium
    • technologies aws, s3, ec2, orientdb, scala, java
  9. graphical browser for bio4j model
    • difficulty medium
    • technologies datavis, javascript, blueprints, titan, neo4j
  10. Cytoscape app/plugin for bio4j
    • difficulty medium
    • technologies scala, java, javascript, datavis, blueprints
  11. graphml/gexf exporter
    • difficulty easy
    • technologies java, scala, blueprints
  12. Bio4j Gephi Toolkit
    • difficulty easy
    • technologies java, scala, blueprints, gremlin