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Alternative Syntaxes

This folder is a collection of alternative / user defined syntax definitions to expand functionality to best suit your needs. These don't fall into the main 'bioSyntax' theme but are often useful / preferred.

To learn how to develop and submit your own syntax files see: Development Page


fasta-ORF by @ababaian

Fasta Open Reading Frame. For dealing with coding sequences (CDS) this syntax recognizes the first ATG start codon and alternatively colors each subsequent codon until a STOP codon is reached. No nested ORF support yet. fasta-ORF Screenshot