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Francesco Asnicar edited this page Jul 6, 2021 · 4 revisions
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PhyloPhlAn 3.0 Tutorials:

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes.

Most likely the easiest way to understand how you can use PhyloPhlAn in your analysis is to check out the examples below:


If you used PhyloPhlAn please cite the following paper:

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G. Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, and Nicola Segata
Nat Commun 11, 2500 (2020)

Overview of PhyloPhlAn method