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Change the default k to 64, add 32 and 96 #2
Hi, Michael. The default value of k of 25 is much too low for most data sets. This patch increases the default value of k to 64, and adds 32 and 96 as low- and high-k alternatives. We're looking into integrating KmerGenie or similar into the ABySS docker file. Have you considered integrating a k-choosing tool into Nucleotid.es upstream of all dBG assemblers?
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Oct 3, 2014
Thank you for the pull request Shaun. I have merged this.
Thank you for adding a default to the Profile, I prefer that each image has
I also agree that KmerGenie could be another good alternative. You could