BioBuilds

Repositories

• biobuilds

  Curated collection of open-source bioinformatics tools
  Shell 2 28 2 0 Updated Feb 5, 2019

• python3statement.github.io

  Forked from python3statement/python3statement.github.io
  CSS 127 0 0 0 Updated Jan 25, 2019

• cufflinks

  Forked from cole-trapnell-lab/cufflinks
  C++ 111 0 1 0 Updated Jan 5, 2019

• docker

  BioBuilds-related Docker images and utilities
  Shell BSD-3-Clause 0 0 0 0 Updated Dec 27, 2018

• bwa

  Forked from lh3/bwa

  Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
  C GPL-3.0 453 0 0 0 Updated Aug 22, 2018

• bowtie2

  Forked from BenLangmead/bowtie2

  A fast and sensitive gapped read aligner
  C++ GPL-3.0 121 0 0 0 Updated May 2, 2018

• bamkit

  Forked from hall-lab/bamkit

  Tools for common BAM file manipulations
  Python MIT 3 0 0 0 Updated Nov 9, 2017

• gatk

  Forked from broadinstitute/gatk

  Official code repository for GATK versions 4 and up
  Java BSD-3-Clause 387 0 0 0 Updated Sep 6, 2017

• libgtextutils

  Forked from agordon/libgtextutils

  Gordon's Text utils Library
  C++ AGPL-3.0 13 0 0 0 Updated Aug 14, 2017

• fastx_toolkit

  Forked from agordon/fastx_toolkit

  FASTA/FASTQ pre-processing programs
  C 55 0 0 0 Updated Aug 14, 2017

• vcflib

  Forked from vcflib/vcflib

  a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
  C++ MIT 188 0 0 0 Updated May 30, 2017

• ngs

  Forked from ncbi/ngs

  NGS Language Bindings
  C++ 50 0 0 0 Updated Nov 17, 2016

• sra-tools

  Forked from ncbi/sra-tools

  SRA Tools
  Shell 161 0 0 0 Updated Nov 17, 2016

• oases

  Forked from dzerbino/oases

  De novo transcriptome assembler for short reads
  C GPL-3.0 9 0 0 0 Updated Nov 1, 2016

• plink-ng

  Forked from chrchang/plink-ng

  A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
  C GPL-3.0 85 0 0 0 Updated Oct 20, 2016

• chimerascan

  Automatically exported from code.google.com/p/chimerascan
  Python GPL-3.0 0 0 15 0 Updated Mar 21, 2016

• bioperl-ext

  Forked from bioperl/bioperl-ext

  XS-based BioPerl extensions to C libraries (defunct)
  C 7 0 0 0 Updated Mar 7, 2016

• ncbi-vdb

  Forked from ncbi/ncbi-vdb

  ncbi-vdb
  C 30 0 0 0 Updated Feb 16, 2016

• SOAPdenovo2

  Forked from aquaskyline/SOAPdenovo2

  Next generation sequencing reads de novo assembler.
  C GPL-3.0 54 0 0 0 Updated Jul 1, 2015

• CEGMA_v2

  Forked from KorfLab/CEGMA_v2

  The final version 2 release of our software to detect core genes in eukaryotic genomes
  Perl 5 0 0 0 Updated Mar 31, 2015