Skip to content
OCaml Bioinformatics Library http://biocaml.org
OCaml C CSS
Find file
Pull request Compare This branch is 5 commits ahead, 1242 commits behind master.
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Failed to load latest commit information.
notes
src
.gitignore
INSTALL
LICENSE
Makefile
README.md
_oasis
_tags
configure
myocamlbuild.ml
setup.ml

README.md

Biocaml - The OCaml Bioinformatics Library

DESCRIPTION

Biocaml aims to be a high-performance user-friendly library for Bioinformatics. Current features include:

  • Support for several standard data formats

    • SGR
    • WIG
    • FASTA
    • BED
    • GFF (version 2 and 3)
    • UCSC track files
    • ELAND
    • BPMAP
    • CEL

    Support includes not just parsing and printing, but also various operations dependent on the specific data type represented.

  • Classification of items into bins and histograms with polymorphic bin types.

  • Basic math and statistics routines

  • Coming soon:

    • Peak finding algorithms
    • Efficient querying of annotations
    • Efficient computations for sets of integer intervals
    • ... and more!

INSTALLATION

Please see INSTALL file.

LICENSE

The Biocaml library is distributed according to the LGPL + linking exception terms as defined in the LICENSE file, which you should have received a copy of along with this library.

CONTACT

Ashish Agarwal: agarwal1975@gmail.com
Website: http://biocaml.org

Something went wrong with that request. Please try again.