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branch: master
Commits on Apr 4, 2013
  1. @goglepox

    Merge pull request #1 from egonw/1-fixViewStart

    goglepox authored
    Use Arvid's trick for getting the history object
Commits on Mar 26, 2013
  1. @egonw

    Removed versioned dependencies

    egonw authored
  2. @egonw
Commits on Mar 17, 2011
  1. @jonalv

    set version to 2.5.0.qualifier

    jonalv authored
Commits on Mar 14, 2011
  1. @egonw
  2. @egonw
Commits on Jan 31, 2011
  1. @masak @egonw

    replaced shell process with JRI process

    masak authored egonw committed
    This makes for a more robust connection with R, and hopefully provides a
    better way to communicate back and forth between R and Bioclipse,
    long-term. The console output still needs some fixing-up, and right now
    Bioclipse dies unless provided with the VM argument
    
     -Djava.library.path="/Library/Frameworks/R.framework/Resources/library/rJava/jri:"
    
    (Settable under the tab "Arguments" in Run Configurations.)
Commits on Aug 26, 2010
  1. @masak @olas

    [TextR] de-bitrotted platform detection

    masak authored olas committed
    Something has changed under us; updated fudging code to catch up.
Commits on Jul 9, 2010
  1. @olas

    Merge branch '2.4.x'

    olas authored
Commits on Jul 7, 2010
  1. @jonalv

    set version 2.4.0.20100709

    jonalv authored
  2. @jonalv @olas

    fix deps

    jonalv authored olas committed
  3. @jonalv @olas

    set version 2.4.0.RC3

    jonalv authored olas committed
Commits on Jun 14, 2010
  1. @jonalv @olas

    Set version to 2.4.0.RC2

    jonalv authored olas committed
Commits on May 31, 2010
  1. removed version number for log4j dep

    Ola Spjuth authored Ola Spjuth committed
  2. @jonalv @olas

    removed version number for log4j dep

    jonalv authored olas committed
Commits on May 25, 2010
  1. Set version to 2.4.0.RC1

    Ola Spjuth authored
Commits on Apr 4, 2010
  1. @masak @olas

    de-Javadoc'd all copyright/license comments

    masak authored olas committed
    See ticket #1355.
Commits on Jan 27, 2010
  1. @olas

    Set version to 2.2.0.v20100127

    olas authored
Commits on Dec 18, 2009
  1. @olas

    set version to 2.2.0.RC3.

    olas authored
Commits on Dec 4, 2009
  1. @olas

    Set feature deps to 2.2.0.RC2.

    olas authored
Commits on Dec 3, 2009
  1. @olas

    Updated version to 2.2.0.RC2.

    olas authored
Commits on Nov 3, 2009
  1. @olas
Commits on Jul 17, 2009
  1. @egonw

    Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.

    ospjuth authored egonw committed
  2. @egonw

    Updated feature versions to 2.0.0.RC5 for release candidate 5.

    ospjuth authored egonw committed
  3. @egonw

    Set version to 2.0.0.RC4 for release candidate 4.

    ospjuth authored egonw committed
  4. @egonw

    Set version to 2.0.0.RC3

    ospjuth authored egonw committed
  5. @egonw

    Set version to 2.0.0.RC2.

    ospjuth authored egonw committed
  6. @egonw

    Set version to 2.0.0.RC1 for release candidate 1.

    ospjuth authored egonw committed
  7. @egonw

    Set ID to 20090526 for testing update site with experimental feature.

    ospjuth authored egonw committed
  8. @egonw

    factored out code into method

    carl_masak authored egonw committed
    The new method, 'carryOutCommand', prints the command to the console and
    executes it. It is thus a wrapper for 'executeCommand'. It's private, but
    there's a public 'carryOutCommandAndWait' that also waits for the script
    execution to finish before returning control.
    
    Fixes #941.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10120 fcb5ba71-d80d-0410-8237-ba3920747fcc
  9. @egonw

    Fixed file permissions for native pty. Required renaming of pty to no…

    ospjuth authored egonw committed
    …t contain spaces, hardcoded this for "mac os x". R-console now runs in exported versions. Solves bug #967.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10011 fcb5ba71-d80d-0410-8237-ba3920747fcc
  10. @egonw

    Updated experimental versions to 2.0.0.B20090417

    ospjuth authored egonw committed
  11. @egonw

    Set R working dir to bioclipse-workspace on R console initialization.

    ospjuth authored egonw committed
  12. @egonw

    reinstated js injection in R

    carl_masak authored egonw committed
    You can now write
    
    > `answer` * 100
    [1] 4200
    
    and have the js variable 'answer' be interpolated into the R expression.
    Fixes bug #856.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@9809 fcb5ba71-d80d-0410-8237-ba3920747fcc
  13. @egonw

    Updated version and build.props for including R in experimental featu…

    ospjuth authored egonw committed
    …re beta4.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@9752 fcb5ba71-d80d-0410-8237-ba3920747fcc
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