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@egonw

egonw Jul 21, 2011

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The space in this command, breaks tokenization on Linux, causing an ignore ARGUMENT (caps from error message): repos='http://download.walware.de/rj-0.5')

That is, it sees: -e "install.packages('rj', as the call to execute the command...

However, removing that space from the command does not help either:

08:47:31.343 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e "install.packages('rj',repos='http://download.walware.de/rj-0.5')" -s
08:47:31.344 DEBUG [n.bioclipse.r.business.RBusinessManager] OS: Linux
08:47:31.627 DEBUG [n.bioclipse.r.business.RBusinessManager] STDOUT: [1] "install.packages('rj',repos='http://download.walware.de/rj-0.5')"

08:47:31.628 DEBUG [n.bioclipse.r.business.RBusinessManager] STDERR:
08:47:31.628 DEBUG [n.bioclipse.r.business.RBusinessManager] Status: [1] "install.packages('rj',repos='http://download.walware.de/rj-0.5')"

08:47:31.628 DEBUG [net.bioclipse.r.RServiManager] Using R_HOME: /usr/lib/R