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<?xml version='1.0' encoding='UTF-8'?>
<fims>
<metadata
doi="a doi"
shortname="DIPNet"
eml_location="eml_location"
expeditionForwardingAddress="http://biscicol.org/dipnet/bcids/metadata/{ark}"
datasetForwardingAddress="http://biscicol.org/dipnet/bcids/metadata/{ark}">
<![CDATA[Although there are a lot of field options, only four are <u>REQUIRED</u>: materialSampleID, principalInvestigator, phylum and
EITHER decimalLatitude AND decimalLongitude OR locality (lat/longs are preferred) are required. Thirteen additional
fields are recommended, and thus automatically checked in the default template.]]>
</metadata>
<validation>
<worksheet sheetname='Samples'>
<rule type='duplicateColumnNames' level='error'></rule>
<rule type='uniqueValue' column='materialSampleID' level='error'></rule>
<rule type='validForURI' column='materialSampleID' level='error'></rule>
<rule type='RequiredColumns' column='RequiredColumns' level='error'>
<field>materialSampleID</field>
<field>principalInvestigator</field>
<field>phylum</field>
</rule>
<rule type='RequiredColumns' column='RequiredColumns' level='warning'>
<field>yearCollected</field>
<field>monthCollected</field>
<field>dayCollected</field>
<field>permitInformation</field>
<field>locality</field>
<field>decimalLatitude</field>
<field>decimalLongitude</field>
<field>coordinateUncertaintyInMeters</field>
<field>georeferenceProtocol</field>
<field>basisOfIdentification</field>
<field>genus</field>
<field>species</field>
<field>country</field>
<field>sex</field>
<field>geneticTissueType</field>
<field>lifeStage</field>
</rule>
<rule type='minimumMaximumNumberCheck' column='minimumDepthInMeters,maximumDepthInMeters'
level='error'></rule>
<rule type='minimumMaximumNumberCheck'
column='minimumDistanceAboveSurfaceInMeters,maximumDistanceAboveSurfaceInMeters' level='error'></rule>
<rule type='isNumber' column='weight' level='error'></rule>
<rule type='isNumber' column='length' level='error'></rule>
<rule type='controlledVocabulary' column='phylum' list='phylum' level='error'></rule>
<rule type='controlledVocabulary' column='habitat' list='habitat' level='warning'></rule>
<rule type='controlledVocabulary' column='basisOfIdentification' list='basisOfIdentification'
level='warning'></rule>
<rule type='controlledVocabulary' column='sex' list='sex' level='warning'></rule>
<rule type='controlledVocabulary' column='establishmentMeans' list='establishmentMeans'
level='warning'></rule>
<rule type='controlledVocabulary' column='lifeStage' list='lifeStage' level='warning'></rule>
<rule type='controlledVocabulary' column='country' list='country' level='error'></rule>
<rule type="requiredValueFromOtherColumn" column="decimalLatitude" otherColumn="decimalLongitude"
level="error"></rule>
<rule type="requiredValueFromOtherColumn" column="decimalLongitude" otherColumn="decimalLatitude"
level="error"></rule>
<rule type="requiredColumnInGroup" level="error">
<field>locality</field>
<field>decimalLatitude</field>
<field>decimalLongitude</field>
</rule>
</worksheet>
<lists>
<list alias="markers">
<field>
CYB
<definition><![CDATA[mitochondrial cytocrhome B]]></definition>
</field>
<field>
CO1
<definition><![CDATA[mitochondrial cytochrome c oxidase subunit 1]]></definition>
</field>
<field>
CO2
<definition><![CDATA[mitochondrial cytochrome c oxidase subunit 2]]></definition>
</field>
<field>
CR
<definition><![CDATA[mitochondrial control region]]></definition>
</field>
<field>
A68
<definition><![CDATA[]]></definition>
</field>
<field>
ND2
<definition><![CDATA[mitochondiral ND2 protein ]]></definition>
</field>
<field>
16S
<definition><![CDATA[mitochondrial 16S ribosomal RNA]]></definition>
</field>
<field>
18S
<definition><![CDATA[18S ribosomal RNA]]></definition>
</field>
<field>
S7
<definition><![CDATA[S7 ribosomal protein gene]]></definition>
</field>
<field>
RAG
<definition><![CDATA[recombination-activating gene]]></definition>
</field>
<field>
TMO
<definition><![CDATA[TMO 4C4 gene]]></definition>
</field>
<field>
GnRH
<definition><![CDATA[gonadotropin-releasing hormone gene]]></definition>
</field>
<field>
NEW_MARKER
<definition><![CDATA[marker not listed]]></definition>
</field>
</list>
<list alias="libraryLayout">
<field>single</field>
<field>paired</field>
</list>
<list alias="libraryStrategy">
<field>WGA
<definition>
<![CDATA[Random sequencing of the whole genome following non-pcr amplification]]></definition>
</field>
<field>WGS
<definition><![CDATA[Random sequencing of the whole genome]]></definition>
</field>
<field>WXS
<definition><![CDATA[Random sequencing of exonic regions selected from the genome]]></definition>
</field>
<field>RNA-Seq
<definition><![CDATA[Random sequencing of whole transcriptome]]></definition>
</field>
<field>miRNA-Seq
<definition><![CDATA[Random sequencing of small miRNAs]]></definition>
</field>
<field>WCS
<definition>
<![CDATA[Random sequencing of a whole chromosome or other replicon isolated from a genome]]></definition>
</field>
<field>CLONE
<definition><![CDATA[Genomic clone based (hierarchical) sequencing]]></definition>
</field>
<field>POOLCLONE
<definition><![CDATA[Shotgun of pooled clones (usually BACs and Fosmids)]]></definition>
</field>
<field>AMPLICON
<definition><![CDATA[Sequencing of overlapping or distinct PCR or RT-PCR products]]></definition>
</field>
<field>CLONEEND
<definition><![CDATA[Clone end (5', 3', or both) sequencing]]></definition>
</field>
<field>FINISHING
<definition><![CDATA[Sequencing intended to finish (close) gaps in existing coverage]]></definition>
</field>
<field>ChIP-Seq
<definition><![CDATA[Direct sequencing of chromatin immunoprecipitates]]></definition>
</field>
<field>MNase-Seq
<definition><![CDATA[Direct sequencing following MNase digestion]]></definition>
</field>
<field>DNase-Hypersensitivity
<definition>
<![CDATA[Sequencing of hypersensitive sites, or segments of open chromatin that are more readily cleaved by DNaseI]]></definition>
</field>
<field>Bisulfite-Seq
<definition>
<![CDATA[Sequencing following treatment of DNA with bisulfite to convert cytosine residues to uracil depending on methylation status]]></definition>
</field>
<field>Tn-Seq
<definition><![CDATA[Sequencing from transposon insertion sites]]></definition>
</field>
<field>EST
<definition><![CDATA[Single pass sequencing of cDNA templates]]></definition>
</field>
<field>FL-cDNA
<definition><![CDATA[Full-length sequencing of cDNA templates]]></definition>
</field>
<field>CTS
<definition><![CDATA[Concatenated Tag Sequencing]]></definition>
</field>
<field>MRE-Seq
<definition><![CDATA[Methylation-Sensitive Restriction Enzyme Sequencing strategy]]></definition>
</field>
<field>MeDIP-Seq
<definition><![CDATA[Methylated DNA Immunoprecipitation Sequencing strategy]]></definition>
</field>
<field>MBD-Seq
<definition><![CDATA[Direct sequencing of methylated fractions sequencing strategy]]></definition>
</field>
<field>Synthetic-Long-Read
<definition><![CDATA[]]></definition>
</field>
<field>OTHER
<definition>
<![CDATA[Library strategy not listed (please include additional info in the “design description”)]]></definition>
</field>
</list>
<list alias="librarySource">
<field>GENOMIC
<definition><![CDATA[Genomic DNA (includes PCR products from genomic DNA)]]></definition>
</field>
<field>TRANSCRIPTOMIC
<definition>
<![CDATA[Transcription products or non genomic DNA (EST, cDNA, RT-PCR, screened libraries)]]></definition>
</field>
<field>METAGENOMIC
<definition><![CDATA[Mixed material from metagenome]]></definition>
</field>
<field>METATRANSCRIPTOMIC
<definition><![CDATA[Transcription products from community targets]]></definition>
</field>
<field>SYNTHETIC
<definition><![CDATA[Synthetic DNA]]></definition>
</field>
<field>VIRAL RNA
<definition><![CDATA[Viral RNA]]></definition>
</field>
<field>OTHER
<definition>
<![CDATA[Other, unspecified, or unknown library source material (please include additional info in the “design description”)]]></definition>
</field>
</list>
<list alias="librarySelection">
<field>RANDOM
<definition><![CDATA[Random selection by shearing or other method]]></definition>
</field>
<field>PCR
<definition><![CDATA[Source material was selected by designed primers]]></definition>
</field>
<field>RANDOM PCR
<definition><![CDATA[Source material was selected by randomly generated primers]]></definition>
</field>
<field>RT-PCR
<definition><![CDATA[Source material was selected by reverse transcription PCR]]></definition>
</field>
<field>HMPR
<definition><![CDATA[Hypo-methylated partial restriction digest]]></definition>
</field>
<field>MF
<definition><![CDATA[Methyl Filtrated]]></definition>
</field>
<field>CF-S
<definition><![CDATA[Cot-filtered single/low-copy genomic DNA]]></definition>
</field>
<field>CF-M
<definition><![CDATA[Cot-filtered moderately repetitive genomic DNA]]></definition>
</field>
<field>CF-H
<definition><![CDATA[Cot-filtered highly repetitive genomic DNA]]></definition>
</field>
<field>CF-T
<definition><![CDATA[Cot-filtered theoretical single-copy genomic DNA]]></definition>
</field>
<field>MDA
<definition><![CDATA[Multiple displacement amplification]]></definition>
</field>
<field>MSLL
<definition><![CDATA[Methylation Spanning Linking Library]]></definition>
</field>
<field>cDNA
<definition><![CDATA[complementary DNA]]></definition>
</field>
<field>ChIP
<definition><![CDATA[Chromatin immunoprecipitation]]></definition>
</field>
<field>MNase
<definition><![CDATA[Micrococcal Nuclease (MNase) digestion]]></definition>
</field>
<field>DNAse
<definition><![CDATA[Deoxyribonuclease (MNase) digestion]]></definition>
</field>
<field>Hybrid Selection
<definition><![CDATA[Selection by hybridization in array or solution]]></definition>
</field>
<field>Reduced Representation
<definition>
<![CDATA[Reproducible genomic subsets, often generated by restriction fragment size selection, containing a manageable number of loci to facilitate re-sampling]]></definition>
</field>
<field>Restriction Digest
<definition><![CDATA[DNA fractionation using restriction enzymes]]></definition>
</field>
<field>5-methylcytidine antibody
<definition>
<![CDATA[Selection of methylated DNA fragments using an antibody raised against 5-methylcytosine or 5-methylcytidine (m5C)]]></definition>
</field>
<field>MBD2 protein methyl-CpG binding domain
<definition><![CDATA[Enrichment by methyl-CpG binding domain]]></definition>
</field>
<field>CAGE
<definition><![CDATA[Cap-analysis gene expression]]></definition>
</field>
<field>RACE
<definition><![CDATA[Rapid Amplification of cDNA Ends]]></definition>
</field>
<field>size fractionation
<definition><![CDATA[Physical selection of size appropriate targets]]></definition>
</field>
<field>Padlock probes capture method
<definition><![CDATA[Circularized oligonucleotide probes]]></definition>
</field>
<field>other
<definition>
<![CDATA[Other library enrichment, screening, or selection process (please include additional info in the “design description”)]]></definition>
</field>
<field>unspecified
<definition>
<![CDATA[Library enrichment, screening, or selection is not specified (please include additional info in the “design description”)]]></definition>
</field>
</list>
<list alias="platform">
<field>_LS454</field>
<field>ILLUMINA</field>
<field>HELICOS</field>
<field>ABI_SOLID</field>
<field>COMPLETE_GENOMICS</field>
<field>PACBIO_SMRT</field>
<field>ION_TORRENT</field>
<field>CAPILLARY</field>
<field>OXFORD_NANOPORE</field>
</list>
<list alias="_LS454">
<field>454 GS</field>
<field>454 GS 20</field>
<field>454 GS FLX</field>
<field>454 GS FLX+</field>
<field>454 GS FLX Titanium</field>
<field>454 GS Junior</field>
</list>
<list alias="ILLUMINA">
<field>Illumina Genome Analyzer</field>
<field>Illumina Genome Analyzer II</field>
<field>Illumina Genome Analyzer IIx</field>
<field>Illumina HiSeq 2500</field>
<field>Illumina HiSeq 2000</field>
<field>Illumina HiSeq 1000</field>
<field>Illumina MiSeq</field>
<field>Illumina HiScanSQ</field>
<field>NextSeq 500</field>
<field>HiSeq X Ten</field>
<field>HiSeq X Five</field>
<field>Illumina HiSeq 1500</field>
<field>Illumina HiSeq 3000</field>
<field>Illumina HiSeq 4000</field>
<field>NextSeq 550</field>
</list>
<list alias="HELICOS">
<field>Helicos HeliScope</field>
</list>
<list alias="ABI_SOLID">
<field>AB SOLiD System</field>
<field>AB SOLiD System 2.0</field>
<field>AB SOLiD System 3.0</field>
<field>AB SOLiD 4 System</field>
<field>AB SOLiD 4hq System</field>
<field>AB SOLiD PI System</field>
<field>AB 5500 Genetic Analyzer</field>
<field>AB 5500xl Genetic Analyzer</field>
<field>AB 5500x-Wl Genetic Analyzer</field>
<field>AB SOLiD 3 Plus System</field>
</list>
<list alias="COMPLETE_GENOMICS">
<field>Complete Genomics</field>
</list>
<list alias="PACBIO_SMRT">
<field>PacBio RS</field>
<field>PacBio RS II</field>
</list>
<list alias="ION_TORRENT">
<field>Ion Torrent PGM</field>
<field>Ion Torrent Proton</field>
</list>
<list alias="CAPILLARY">
<field>AB 3730xL Genetic Analyzer</field>
<field>AB 3730 Genetic Analyzer</field>
<field>AB 3500xL Genetic Analyzer</field>
<field>AB 3500 Genetic Analyzer</field>
<field>AB 3130xL Genetic Analyzer</field>
<field>AB 3130 Genetic Analyzer</field>
<field>AB 310 Genetic Analyzer</field>
</list>
<list alias="OXFORD_NANOPORE">
<field>GridION</field>
<field>MinION</field>
</list>
<list alias='habitat' caseInsensitive='true'>
<field>Coral Reef</field>
<field>Estuary</field>
<field>Intertidal</field>
<field>Fouling</field>
<field>Macroalgae</field>
<field>Mangrove</field>
<field>Mud</field>
<field>Continental shelf</field>
<field>Pelagic</field>
<field>Planktonic</field>
<field>River</field>
<field>Rock</field>
<field>Sand</field>
<field>Seagrass</field>
</list>
<list alias='basisOfIdentification' caseInsensitive='true'>
<field>Genetics</field>
<field>Morphology</field>
<field>Other</field>
</list>
<list alias='sex' caseInsensitive='true'>
<field>male</field>
<field>female</field>
<field>pooled male and female</field>
<field>neuter</field>
<field>hermaphrodite</field>
<field>intersex</field>
<field>not determined</field>
<field>missing</field>
<field>not applicable</field>
<field>not collected</field>
</list>
<list alias='establishmentMeans' caseInsensitive="true">
<field>native</field>
<field>introduced</field>
<field>naturalized</field>
<field>invasive</field>
<field>managed</field>
</list>
<list alias='lifeStage' caseInsensitive='true'>
<field>larva</field>
<field>juvenile</field>
<field>adult</field>
<field>Not Collected</field>
<field>Not Applicable</field>
</list>
<list alias='phylum' caseInsensitive='true'>
<field>Acoelomorpha</field>
<field>Annelida</field>
<field>Arthropoda</field>
<field>Brachiopoda</field>
<field>Bryozoa</field>
<field>Chaetognatha</field>
<field>Chordata</field>
<field>Cnidaria</field>
<field>Ctenophora</field>
<field>Cycliophora</field>
<field>Echinodermata</field>
<field>Entoprocta</field>
<field>Gastrotricha</field>
<field>Gnathostomulida</field>
<field>Hemichordata</field>
<field>Kinorhyncha</field>
<field>Loricifera</field>
<field>Micrognathozoa</field>
<field>Mollusca</field>
<field>Nematoda</field>
<field>Nematomorpha</field>
<field>Nemertea</field>
<field>Onychophora</field>
<field>Orthonectida</field>
<field>Phoronida</field>
<field>Placozoa</field>
<field>Platyhelminthes</field>
<field>Porifera</field>
<field>Priapulida</field>
<field>Rhombozoa</field>
<field>Rotifera</field>
<field>Sipuncula</field>
<field>Tardigrada</field>
<field>Xenoturbellida</field>
</list>
<list alias='country' caseInsensitive='true'>
<field>Afghanistan</field>
<field>Albania</field>
<field>Algeria</field>
<field>American Samoa</field>
<field>Andorra</field>
<field>Angola</field>
<field>Anguilla</field>
<field>Antarctica</field>
<field>Antigua and Barbuda</field>
<field>Arctic Ocean</field>
<field>Argentina</field>
<field>Armenia</field>
<field>Aruba</field>
<field>Ashmore and Cartier Islands</field>
<field>Atlantic Ocean</field>
<field>Australia</field>
<field>Austria</field>
<field>Azerbaijan</field>
<field>Bahamas</field>
<field>Bahrain</field>
<field>Baltic Sea</field>
<field>Baker Island</field>
<field>Bangladesh</field>
<field>Barbados</field>
<field>Bassas da India</field>
<field>Belarus</field>
<field>Belgium</field>
<field>Belize</field>
<field>Benin</field>
<field>Bermuda</field>
<field>Bhutan</field>
<field>Bolivia</field>
<field>Borneo</field>
<field>Bosnia and Herzegovina</field>
<field>Botswana</field>
<field>Bouvet Island</field>
<field>Brazil</field>
<field>British Virgin Islands</field>
<field>Brunei</field>
<field>Bulgaria</field>
<field>Burkina Faso</field>
<field>Burundi</field>
<field>Cambodia</field>
<field>Cameroon</field>
<field>Canada</field>
<field>Cape Verde</field>
<field>Cayman Islands</field>
<field>Central African Republic</field>
<field>Chad</field>
<field>Chile</field>
<field>China</field>
<field>Christmas Island</field>
<field>Clipperton Island</field>
<field>Cocos Islands</field>
<field>Colombia</field>
<field>Comoros</field>
<field>Cook Islands</field>
<field>Coral Sea Islands</field>
<field>Costa Rica</field>
<field>Cote d'Ivoire</field>
<field>Croatia</field>
<field>Cuba</field>
<field>Curacao</field>
<field>Cyprus</field>
<field>Czech Republic</field>
<field>Democratic Republic of the Congo</field>
<field>Denmark</field>
<field>Djibouti</field>
<field>Dominica</field>
<field>Dominican Republic</field>
<field>East Timor</field>
<field>Ecuador</field>
<field>Egypt</field>
<field>El Salvador</field>
<field>Equatorial Guinea</field>
<field>Eritrea</field>
<field>Estonia</field>
<field>Ethiopia</field>
<field>Europa Island</field>
<field>Falkland Islands (Islas Malvinas)</field>
<field>Faroe Islands</field>
<field>Fiji</field>
<field>Finland</field>
<field>France</field>
<field>French Guiana</field>
<field>French Polynesia</field>
<field>French Southern and Antarctic Lands</field>
<field>Gabon</field>
<field>Gambia</field>
<field>Gaza Strip</field>
<field>Georgia</field>
<field>Germany</field>
<field>Ghana</field>
<field>Gibraltar</field>
<field>Glorioso Islands</field>
<field>Greece</field>
<field>Greenland</field>
<field>Grenada</field>
<field>Guadeloupe</field>
<field>Guam</field>
<field>Guatemala</field>
<field>Guernsey</field>
<field>Guinea</field>
<field>Guinea-Bissau</field>
<field>Guyana</field>
<field>Haiti</field>
<field>Heard Island and McDonald Islands</field>
<field>Honduras</field>
<field>Hong Kong</field>
<field>Howland Island</field>
<field>Hungary</field>
<field>Iceland</field>
<field>India</field>
<field>Indian Ocean</field>
<field>Indonesia</field>
<field>Iran</field>
<field>Iraq</field>
<field>Ireland</field>
<field>Isle of Man</field>
<field>Israel</field>
<field>Italy</field>
<field>Jamaica</field>
<field>Jan Mayen</field>
<field>Japan</field>
<field>Jarvis Island</field>
<field>Jersey</field>
<field>Johnston Atoll</field>
<field>Jordan</field>
<field>Juan de Nova Island</field>
<field>Kazakhstan</field>
<field>Kenya</field>
<field>Kerguelen Archipelago</field>
<field>Kingman Reef</field>
<field>Kiribati</field>
<field>Kosovo</field>
<field>Kuwait</field>
<field>Kyrgyzstan</field>
<field>Laos</field>
<field>Latvia</field>
<field>Lebanon</field>
<field>Lesotho</field>
<field>Liberia</field>
<field>Libya</field>
<field>Liechtenstein</field>
<field>Line Islands</field>
<field>Lithuania</field>
<field>Luxembourg</field>
<field>Macau</field>
<field>Macedonia</field>
<field>Madagascar</field>
<field>Malawi</field>
<field>Malaysia</field>
<field>Maldives</field>
<field>Mali</field>
<field>Malta</field>
<field>Marshall Islands</field>
<field>Martinique</field>
<field>Mauritania</field>
<field>Mauritius</field>
<field>Mayotte</field>
<field>Mediterranean Sea</field>
<field>Mexico</field>
<field>Micronesia</field>
<field>Midway Islands</field>
<field>Moldova</field>
<field>Monaco</field>
<field>Mongolia</field>
<field>Montenegro</field>
<field>Montserrat</field>
<field>Morocco</field>
<field>Mozambique</field>
<field>Myanmar</field>
<field>Namibia</field>
<field>Nauru</field>
<field>Navassa Island</field>
<field>Nepal</field>
<field>Netherlands</field>
<field>New Caledonia</field>
<field>New Zealand</field>
<field>Nicaragua</field>
<field>Niger</field>
<field>Nigeria</field>
<field>Niue</field>
<field>Norfolk Island</field>
<field>North Korea</field>
<field>North Sea</field>
<field>Northern Mariana Islands</field>
<field>Norway</field>
<field>Oman</field>
<field>Pacific Ocean</field>
<field>Pakistan</field>
<field>Palau</field>
<field>Palmyra Atoll</field>
<field>Panama</field>
<field>Papua New Guinea</field>
<field>Paracel Islands</field>
<field>Paraguay</field>
<field>Peru</field>
<field>Philippines</field>
<field>Pitcairn Islands</field>
<field>Poland</field>
<field>Portugal</field>
<field>Puerto Rico</field>
<field>Qatar</field>
<field>Republic of the Congo</field>
<field>Reunion</field>
<field>Romania</field>
<field>Ross Sea</field>
<field>Russia</field>
<field>Rwanda</field>
<field>Saint Helena</field>
<field>Saint Kitts and Nevis</field>
<field>Saint Lucia</field>
<field>Saint Pierre and Miquelon</field>
<field>Saint Vincent and the Grenadines</field>
<field>Samoa</field>
<field>San Marino</field>
<field>Sao Tome and Principe</field>
<field>Saudi Arabia</field>
<field>Senegal</field>
<field>Serbia</field>
<field>Seychelles</field>
<field>Sierra Leone</field>
<field>Singapore</field>
<field>Sint Maarten</field>
<field>Slovakia</field>
<field>Slovenia</field>
<field>Solomon Islands</field>
<field>Somalia</field>
<field>South Africa</field>
<field>South Georgia and the South Sandwich Islands</field>
<field>South Korea</field>
<field>South Sudan</field>
<field>Southern Ocean</field>
<field>Spain</field>
<field>Spratly Islands</field>
<field>Sri Lanka</field>
<field>State of Palestine</field>
<field>Sudan</field>
<field>Suriname</field>
<field>Svalbard</field>
<field>Swaziland</field>
<field>Sweden</field>
<field>Switzerland</field>
<field>Syria</field>
<field>Taiwan</field>
<field>Tajikistan</field>
<field>Tanzania</field>
<field>Tasman Sea</field>
<field>Thailand</field>
<field>Togo</field>
<field>Tokelau</field>
<field>Tonga</field>
<field>Trinidad and Tobago</field>
<field>Tromelin Island</field>
<field>Tunisia</field>
<field>Turkey</field>
<field>Turkmenistan</field>
<field>Turks and Caicos Islands</field>
<field>Tuvalu</field>
<field>USA</field>
<field>Uganda</field>
<field>Ukraine</field>
<field>United Arab Emirates</field>
<field>United Kingdom</field>
<field>Uruguay</field>
<field>Uzbekistan</field>
<field>Vanuatu</field>
<field>Venezuela</field>
<field>Viet Nam</field>
<field>Virgin Islands</field>
<field>Wake Island</field>
<field>Wallis and Futuna</field>
<field>West Bank</field>
<field>Western Sahara</field>
<field>Yemen</field>
<field>Zambia</field>
<field>Zimbabwe</field>
</list>
</lists>
</validation>
<mapping>
<entity
worksheet="Samples"
uniqueKey="materialSampleID"
conceptAlias="Resource"
conceptURI="http://www.w3.org/2000/01/rdf-schema#Resource"
conceptForwardingAddress="http://biscicol.org/dipnet/bcids/metadata/{ark}2{suffix}">
entityId="1">
<attribute column='materialSampleID' uri='urn:materialSampleID'
defined_by='http://rs.tdwg.org/dwc/terms/MaterialSampleID'>
<![CDATA[The "local" accession number that you use for your laboratory's database. This number should link EXACTLY to the genetic data you are providing for this sample. It must be unique among the numbers that your lab is providing.]]></attribute>
<attribute column='principalInvestigator' uri='urn:principalInvestigator'
defined_by='urn:PrincipalInvestigator'>
<![CDATA[Firstname Lastname (the PI on the grant that generated this data)]]></attribute>
<attribute column='locality' uri='urn:locality' defined_by='http://rs.tdwg.org/dwc/terms/locality'>
<![CDATA[Local name of site. Something that could be found by Google, e.g. city, town, ocean, etc. You must enter a value for this to the best level of precision that you are confident about. A site name like "Sanur" is good. "Indonesia" is fine if that is all you know, or "The Pacific Ocean". If you have no idea where the sample came from, please enter "Earth". Required.]]></attribute>
<attribute column='phylum' uri='urn:phylum' defined_by='http://rs.tdwg.org/dwc/terms/phylum'>
<![CDATA[The full scientific name of the phylum in which the taxon is classified. Required.]]></attribute>
<attribute column='decimalLatitude' uri='urn:decimalLatitude' datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/decimalLatitude'>
<![CDATA[Decimal Degrees. If you don't have this information, you must enter something into the locality field to the best known precision.]]></attribute>
<attribute column='decimalLongitude' uri='urn:decimalLongitude' datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/decimalLongitude'>
<![CDATA[Decimal Degrees. If you don't have this information, you must enter something into the locality field to the best known precision.]]></attribute>
<attribute column='coordinateUncertaintyInMeters' uri='urn:coordinateUncertaintyInMeters' datatype="integer"
defined_by='http://rs.tdwg.org/dwc/terms/coordinateUncertaintyInMeters'>
<![CDATA[In meters.]]></attribute>
<attribute column='georeferenceProtocol' uri='urn:georeferenceProtocol'
defined_by='http://rs.tdwg.org/dwc/terms/georeferenceProtocol'>
<![CDATA[A description or reference to the methods used to determine the spatial footprint, coordinates, and uncertainties (e.g. GPS, Approximated from Google Maps, Based on locality name search in Google Maps (Ben Morris' script) etc.)]]></attribute>
<attribute column='yearCollected' uri='urn:yearCollected' defined_by='urn:yearCollected' datatype="date"
dataformat="YYYY">
<![CDATA[YYYY (the year collected)]]></attribute>
<attribute column='monthCollected' uri='urn:monthCollected' defined_by='urn:monthCollected'
datatype="integer">
<![CDATA[MM (the month collected)]]></attribute>
<attribute column='dayCollected' uri='urn:dayCollected' defined_by='urn:dayCollected' datatype="integer">
<![CDATA[DD (the day collected)]]></attribute>
<attribute column='genus' uri='urn:genus' defined_by='http://rs.tdwg.org/dwc/terms/genus'>
<![CDATA[The full scientific name of the genus in which the taxon is classified.]]></attribute>
<attribute column='species' uri='urn:species' defined_by='http://rs.tdwg.org/dwc/terms/specificEpithet'>
<![CDATA[The name of the first or species epithet of the scientificName.]]></attribute>
<attribute column='permitInformation' uri='urn:permitInformation' defined_by='urn:permitInformation'>
<![CDATA[Please include any permit information (agency, permit#, etc) as a text string]]></attribute>
<attribute column='basisOfIdentification' uri='urn:basisOfIdentification' defined_by='urn:basisOfID'>
<![CDATA[Morphology, Genetic, Other.]]></attribute>
<attribute column='country' uri='urn:country' defined_by='http://rs.tdwg.org/dwc/terms/country'>
<![CDATA[The country where the sample was found. Must be found in associated list in "lists" tab.]]></attribute>
<attribute column='lifeStage' uri='urn:lifeStage' defined_by='http://rs.tdwg.org/dwc/terms/lifeStage'>
<![CDATA[The age class or life stage of the biological individual(s) at the time the Occurrence was recorded. Recommended best practice is to use a controlled vocabulary.]]></attribute>
<attribute column='sex' uri='urn:sex' defined_by='http://rs.tdwg.org/dwc/terms/sex'>
<![CDATA[The sex of the biological individual(s) represented in the Occurrence. Recommended best practice is to use a controlled vocabulary. See associated list on "lists" tab.]]></attribute>
<attribute column='geneticTissueType' uri='urn:geneticTissueType' defined_by='urn:geneticTissueType'>
<![CDATA[A list (concatenated and separated) of the tissue types sampled from this individual, together with any tissue identifiers that were assigned to them]]></attribute>
<attribute column='wormsID' uri='urn:wormsID' defined_by='urn:wormsID'>
<![CDATA[Identification # (AphiaID) for Worms database (http://www.marinespecies.org/). Please try to provide this or the genus/species.]]></attribute>
<attribute column='stateProvince' uri='urn:stateProvince'
defined_by='http://rs.tdwg.org/dwc/terms/stateProvince'>
<![CDATA[The state or province where the sample was found.]]></attribute>
<attribute column='island' uri='urn:island' defined_by='http://rs.tdwg.org/dwc/terms/island'>
<![CDATA[The island where the sample was found.]]></attribute>
<attribute column='islandGroup' uri='urn:islandGroup' defined_by='http://rs.tdwg.org/dwc/terms/islandGroup'>
<![CDATA[The island group or archipelago where the sample was found.]]></attribute>
<attribute column='sampleOwnerInstitutionCode' uri='urn:sampleOwnerInstitutionCode'
defined_by='http://rs.tdwg.org/dwc/terms/ownerInstitutionCode'>
<![CDATA[Most commonly used acronym for your university, agency or institution]]></attribute>
<attribute column='fundingSource' uri='urn:fundingSource' defined_by='urn:fundingSource'>
<![CDATA[Granting body and grant number, can be in a delimited list.]]></attribute>
<attribute column='occurrenceID' uri='urn:occurrenceID'
defined_by='http://rs.tdwg.org/dwc/terms/occurrenceID'>
<![CDATA[Specimen voucher ID]]></attribute>
<attribute column='associatedMedia' uri='urn:associatedMedia'
defined_by='http://rs.tdwg.org/dwc/terms/associatedMedia'>
<![CDATA[Photos, videos etc of the individual. From Darwincore: A list (concatenated and separated) of identifiers (publication, global unique identifier, URI,DOI) of media associated with the Occurrence.]]></attribute>
<attribute column='associatedReferences' uri='urn:associatedReferences'
defined_by='http://rs.tdwg.org/dwc/terms/associatedReferences'>
<![CDATA[Any associated publications/references pertaining to this individual or its derivative tissues or sequences. The first place it was published is particularly relevant. From Darwincore: A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence.]]></attribute>
<attribute column='preservative' uri='urn:preservative'
defined_by='http://rs.tdwg.org/dwc/terms/preparations'>
<![CDATA[A list (concatenated and separated) of preparations and preservation methods for a specimen. Example: "95% EtOH"; "Frozen"]]></attribute>
<attribute column='previousIdentifications' uri='urn:previousIdentifications'
defined_by='http://rs.tdwg.org/dwc/terms/previousIdentifications'>
<![CDATA[A list (concatenated and separated) of previous assignments of names to the Occurrence.]]></attribute>
<attribute column='weight' uri='urn:weight' defined_by='http://purl.obolibrary.org/obo/PATO_0000128'
datatype="float">
<![CDATA[In Grams. Referring to the weight of the organism from which the sample was derived]]></attribute>
<attribute column='length' uri='urn:length' defined_by='http://purl.obolibrary.org/obo/PATO_0000122'
datatype="float">
<![CDATA[In Centimeters. Referring to the length of the organism from which the sample was derived]]></attribute>
<attribute column='establishmentMeans' uri='urn:establishmentMeans'
defined_by='http://rs.tdwg.org/dwc/terms/establishmentMeans'>
<![CDATA[The process by which the biological individual(s) represented in the Occurrence became established at the location. Recommended best practice is to use a controlled vocabulary. See associated list in "lists" tab.]]></attribute>
<attribute column='associatedSequences' uri='urn:associatedSequences'
defined_by='http://rs.tdwg.org/dwc/terms/associatedSequences'>
<![CDATA[A list (concatenated and separated) of identifiers (publication, global unique identifier, URI) of genetic sequence information associated with the Occurrence. Links to Genbank or DRYAD entries.]]></attribute>
<attribute column='occurrenceRemarks' uri='urn:occurrenceRemarks'
defined_by='http://rs.tdwg.org/dwc/terms/occurrenceRemarks'>
<![CDATA[Any other relevant comments or notes about the sample itself.]]></attribute>
<attribute column='habitat' uri='urn:habitat' defined_by='http://purl.obolibrary.org/obo/ENVO_00002036'>
<![CDATA[Habitat from which the sample was collected. Please pick from the associated list in "lists" tab.]]></attribute>
<attribute column='microHabitat' uri='urn:microHabitat' defined_by='urn:microHabitat'>
<![CDATA[Information about the microhabitat from which the sample was collected. E.g. Forereef, coral head]]></attribute>
<attribute column='substratum' uri='urn:substratum'
defined_by='http://purl.obolibrary.org/obo/ENVO_00010483'>
<![CDATA[Substrate from which the individual was sampled. This could be abiotic or biotic (host organism).]]></attribute>
<attribute column='samplingProtocol' uri='urn:samplingProtocol'
defined_by='http://rs.tdwg.org/dwc/terms/samplingProtocol'>
<![CDATA[Brief description of how the sample was taken. From Darwincore: The name of, reference to, or description of the method or protocol used during an Event.]]></attribute>
<attribute column='minimumDepthInMeters' uri='urn:minimumDepthInMeters' datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/minimumDepthInMeters'>
<![CDATA[In Meters. Use with maximum depth to bracket the range of depth at which the sample was taken. In meters (positive values below surface)]]></attribute>
<attribute column='maximumDepthInMeters' uri='urn:maximumDepthInMeters' datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/maximumDepthInMeters'>
<![CDATA[In Meters. Use with minimum depth to bracket the range of depth at which the sample was taken. In meters (positive values below surface)]]></attribute>
<attribute column='minimumDistanceAboveSurfaceInMeters' uri='urn:minimumDistanceAboveSurfaceInMeters'
datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/minimumDistanceAboveSurfaceInMeters'>
<![CDATA[In Meters. Use with maximum distance above surface to bracket the range of height at which the sample was taken in meters (positive values above surface)]]></attribute>
<attribute column='maximumDistanceAboveSurfaceInMeters' uri='urn:maximumDistanceAboveSurfaceInMeters'
datatype="float"
defined_by='http://rs.tdwg.org/dwc/terms/maximumDistanceAboveSurfaceInMeters'>
<![CDATA[In Meters. Use with minimum distance above surface to bracket the range of height at which the sample was taken in meters (positive values above surface)]]></attribute>
<attribute column='associatedTaxa' uri='urn:associatedTaxa'
defined_by='http://rs.tdwg.org/dwc/terms/associatedTaxa'>
<![CDATA[A list (concatenated and separated) of hosts/parasites/symbionts of the sampled individual.]]></attribute>
<attribute column='fieldNotes' uri='urn:fieldNotes' defined_by='http://rs.tdwg.org/dwc/terms/fieldNotes'>
<![CDATA[Any notes taken in the field, or a link to those notes: population size, ecological info, etc.]]></attribute>
<attribute column='eventRemarks' uri='urn:eventRemarks'
defined_by='http://rs.tdwg.org/dwc/terms/eventRemarks'>
<![CDATA[A text string for notes that were written on the original label during collection]]></attribute>
<attribute column='recordedBy' uri='urn:recordedBy' defined_by='http://rs.tdwg.org/dwc/terms/recordedBy'>
<![CDATA[Full Name (can be list -- primary collector first, separate list by semicolons)]]></attribute>
<attribute column='identifiedBy' uri='urn:identifiedBy'
defined_by='http://rs.tdwg.org/dwc/terms/identifiedBy'>
<![CDATA[Full Name (A list (concatenated and separated) of names of people, groups, or organizations who assigned the Taxon to the subject.)]]></attribute>
<attribute column='yearIdentified' uri='urn:yearIdentified' defined_by='urn:yearIdentified' datatype="date"
dataformat="YYYY">
<![CDATA[YYYY]]></attribute>
<attribute column='monthIdentified' uri='urn:monthIdentified' defined_by='urn:monthIdentified'
datatype="integer">
<![CDATA[MM]]></attribute>
<attribute column='dayIdentified' uri='urn:dayIdentified' defined_by='urn:dayIdentified' datatype="integer">
<![CDATA[DD]]></attribute>
<attribute column='class' uri='urn:class' defined_by='http://rs.tdwg.org/dwc/terms/class'>
<![CDATA[The full scientific name of the class in which the taxon is classified.]]></attribute>
<attribute column='order' uri='urn:order' defined_by='http://rs.tdwg.org/dwc/terms/order'>
<![CDATA[The full scientific name of the order in which the taxon is classified.]]></attribute>
<attribute column='family' uri='urn:family' defined_by='http://rs.tdwg.org/dwc/terms/family'>
<![CDATA[The full scientific name of the family in which the taxon is classified.]]></attribute>
<attribute column='subSpecies' uri='urn:subSpecies'
defined_by='http://rs.tdwg.org/dwc/terms/infraspecificEpithet'>
<![CDATA[The name of the lowest or terminal infraspecific epithet of the scientificName, excluding any rank designation.]]></attribute>
<attribute column='vernacularName' uri='urn:vernacularName'
defined_by='http://rs.tdwg.org/dwc/terms/vernacularName'>
<![CDATA[Common name and/or native name]]></attribute>
<attribute column='taxonRemarks' uri='urn:taxonRemarks'
defined_by='http://rs.tdwg.org/dwc/terms/taxonRemarks'>
<![CDATA[Comments or notes about the taxon or name.]]></attribute>
<attribute column='plateID' uri='urn:plateID' defined_by='urn:plateID'>
<![CDATA[A platename where the DNA extract is stored]]></attribute>
<attribute column='wellID' uri='urn:wellID' defined_by='urn:wellID'>
<![CDATA[The well on the plate where the DNA extract is stored]]></attribute>
<attribute column='extractionID' uri='urn:extractionID' defined_by='urn:extractionID'>
<![CDATA[A unique identifier for the extraction (other than plate or well)]]></attribute>
<attribute column='previousTissueID' uri='urn:previousTissueID' defined_by='urn:previousTissueID'>
<![CDATA[Other identifiers for this tissue. E.g. tissue originated in another institution.]]></attribute>
<attribute column='tissueStorageID' uri='urn:tissueStorageID' defined_by='urn:tissueStorageID'>
<![CDATA[A list (concatenated and separated) of further identifiers for the container which holds the material sample.]]></attribute>
</entity>
<entity
conceptAlias="fastaSequence"
conceptURI="urn:fastaSequence"
uniqueKey="marker"
esNestedObject="true">
<attribute column="sequence" uri="urn:sequence">
<![CDATA[Sequence data for the material sample.]]></attribute>
<attribute column="marker" uri="urn:marker"/>
</entity>
<relation>
<subject>fastaSequence</subject>
<predicate>subClassOf</predicate>
<object>Resource</object>
</relation>
<entity
conceptAlias="fastqMetadata"
conceptURI="urn:fastqMetadata">
<attribute column="libraryLayout" uri="urn:libraryLayout"/>
<attribute column="libraryStrategy" uri="urn:libraryStrategy"/>
<attribute column="librarySource" uri="urn:librarySource"/>
<attribute column="librarySelection" uri="urn:librarySelection"/>
<attribute column="platform" uri="urn:platform"/>
<attribute column="instrumentModel" uri="urn:instrumentModel"/>
<attribute column="designDescription" uri="urn:designDescription"/>
<attribute column="filenames" uri="urn:filenames">
<![CDATA[List of filenames to be uploaded to NCBI Genbank SRA]]>
</attribute>
</entity>
<relation>
<subject>fastqMetadata</subject>
<predicate>subClassOf</predicate>
<object>Resource</object>
</relation>
</mapping>
</fims>