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When projecting n. variants, the positions are correctly assumed to be relative to SEQ_START and datum is ignored. So, there's no functional bug as is.
Proposed changes:
Update the grammar. This is the ultimate source of incorrectly setting the datum (specifically, the def_cn_pos rule). As a consequence, all dependent "cn" rules will need to be decomposed to distinct c and n rules.
Add (more) assertions in mapping code to validate datum.
Originally reported by: Reece Hart (Bitbucket: reece, GitHub: reece)
The datum is set to CDS_START for n. variants.
When projecting n. variants, the positions are correctly assumed to be relative to SEQ_START and datum is ignored. So, there's no functional bug as is.
Proposed changes:
def_cn_pos
rule). As a consequence, all dependent "cn" rules will need to be decomposed to distinct c and n rules.The text was updated successfully, but these errors were encountered: