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{% set version = "1.6.0" %}
{% set name = "SingleCellExperiment" %}
{% set bioc = "3.9" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: e100bdfc9835d03ae02111994ec5e4d4
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
noarch: generic
# Suggests: testthat, BiocStyle, knitr, rmarkdown, scRNAseq, magrittr, Rtsne, Matrix
requirements:
host:
- 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
- 'bioconductor-s4vectors >=0.22.0,<0.23.0'
- 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
- r-base
run:
- 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
- 'bioconductor-s4vectors >=0.22.0,<0.23.0'
- 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
- r-base
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: GPL-3
summary: 'Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.'
extra:
parent_recipe:
name: bioconductor-singlecellexperiment
path: recipes/bioconductor-singlecellexperiment
version: 1.2.0
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