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{% set version = "1.24.0" %}
{% set name = "UNDO" %}
{% set bioc = "3.8" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: f1e2a4e8cc746b0f2e99793229b09d79
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
noarch: generic
requirements:
host:
- 'bioconductor-biobase >=2.42.0,<2.43.0'
- 'bioconductor-biocgenerics >=0.28.0,<0.29.0'
- r-base
- r-boot
- r-mass
- r-nnls
run:
- 'bioconductor-biobase >=2.42.0,<2.43.0'
- 'bioconductor-biocgenerics >=0.28.0,<0.29.0'
- r-base
- r-boot
- r-mass
- r-nnls
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: GPL-2
summary: 'UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.'
extra:
identifiers:
- biotools:undo
- doi:10.1093/bioinformatics/btu607
parent_recipe:
name: bioconductor-undo
path: recipes/bioconductor-undo
version: 1.22.0
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