Permalink
Switch branches/tags
2020plus QCF RNASeqRData add_BRB-seqTools add_mockinbir agalma airr alohomora augustus_osx behst2.4 behst4 bgruening-patch-2 bgruening-patch-3 bgruening-patch-4 bgruening-patch-5 bioconda-utils bioconductor blast broken_tool bulk bump/anndata bump/ariba bump/arvados_cwl_runner bump/arvados_python_client bump/bbmap bump/bd2k_python_lib bump/breseq bump/cancerit_allelecount bump/chado_tools bump/cobra bump/comet bump/control_freec bump/cramtools bump/cwltool bump/cyvcf2 bump/damageprofiler bump/diamond bump/downpore bump/dxpy bump/eagle bump/edd bump/elasticluster bump/ema bump/ephemeris bump/extern bump/fishtaco bump/gcs_oauth2_boto_plugin bump/gdc_client bump/gdsctools bump/genomedata bump/gprofiler_official bump/gseapy bump/hichipper bump/jcvi bump/kissplice bump/krakenuniq bump/libsbml bump/meraculous bump/mixcr bump/mlst bump/mpa_portable bump/msproteomicstools bump/mzml2isa bump/ncfp bump/nmrml2isa bump/perl_data_dumper bump/perl_dbd_mysql bump/perl_file_path bump/perl_html_formatter bump/perl_html_tableextract bump/perl_html_tidy bump/perl_image_info bump/perl_libwww_perl bump/perl_lwp_simple bump/perl_math_bigint bump/perl_math_derivative bump/perl_parallel_forkmanager bump/perl_pegex bump/perl_readonly bump/perl_soap_lite bump/perl_template_toolkit bump/perl_test_cleannamespaces bump/perl_xml_libxslt bump/phizz bump/phyloflash bump/porechop bump/ppanini bump/pybel bump/pyega3 bump/pylibseq bump/pypore bump/pyprophet bump/pythomics bump/python_bioext bump/pyx bump/r_dartr bump/r_fastqcr bump/r_fateid bump/r_rbison bump/r_samr bump/r_seqminer bump/r_speaq bump/rseqc bump/schema_salad bump/scrappie bump/segway bump/somaticseq bump/spectra_cluster_cli bump/spine bump/sqlalchemy_datatables bump/star bump/svim bump/synapseclient bump/tandem_genotypes bump/targqc bump/toil bump/topas bump/transit bump/udocker bump/wtdbg bump/wtforms_components calib calour cb3-the-beginning cbaf cgat-apps-0.5.2 changeo checkm-genome-1.0.11 clark-biom cmappy_up cmappy_update colinbrislawn-patch-1 comet-ms/2018013 conda_genomation conda ct-add-gatk ct-enable-travis-fast-finish ct-update-cromwell-1 ct-update-cromwell cwltool-1.0.20180721142728 cwltool-update dlo-hic-tools dsk_2.3.0 ebcoexpress endrebak-patch-1 env_matrix_ext epic-0.1.29 epruesse-patch-1-1 epruesse-patch-1 epruesse-patch-2 expansionhunter ficus fix-hap.py fix-phylotoast fixing-scrappie flowcatchR-recipe genomation gi-eagle hybrid-denovo iSEE-recipe igv-2.4.14 is-add-cromwell-tools is-add-firecloud is-add-pehaplo-2 is-bbmap-update-to-38.32 is-update-spades-to-3.13.0 kalign2 kat-2.4.0-cycler kepbod-patch-2 kraken-ea libstatgen-1.0.5 luketerry-patch-1 luketerry-patch-3 luketerry-patch-7 mafft_7_402 maker-and-deps master mater metabat_try metabat_try2 metabat metabat2_build metawrap_prerequisites metawrap michauhl-patch-1 mirge mkl-dn mkl-dnn mmiladi-patch-1 mmseqs2 moff molpopgen-bump_fwdpy11_build_no mpa msnbase mzr_test nanopolish-0.9 nanopolish-0.9.2-rebuild3 nanopore-0.9.2-rebuild3 nh_update_snakeparse_to_0.1.0 nulk osx_foo pathogist pdb2pqr perl-b-hooks-endofscope perl-crypt-ssleay perl-dd perl-exporter perl-getopt-euclid perl-html-template perl-module-implementation perl-module-runtime perl-rest-client phylue phyml-build-build2 plotly png_pinning pr/9403 pybedtools-0.8 pysam-0.13 qcumber r-bookdown r-eacon r-rphylip r29 remove-perl-moosex-app-1.35 revert-2748-homer revert-3566-cluster-picker revert-4127-probamconvert revert-6758-staged-builds revert-8839-revert-8834 revert-9986-feature/perl-blacklist-2 revert-11266-pb-falcon revert-12330-msgf_openjdk11 riboseed rm_jq rmats-4.0.1 rmats-iso rnbeats rscape rvtests salmonTE-recipe scanpy-scripts schmutzig seed-jellyfish selective-upload-build-lint seqan-lambda-recipe sjackman-quast snippy soft softsearch starseqqr tabview tcoffee-1.13.8 travis-caching trinity-2.1.1 trinity unblacklist_rust_recipes update-pinned-conda update_bioc38_ideal_pcaexplorer update_scalpel_0_5_4 updating-nanosv vg xyalign115
Nothing to show
Find file Copy path
Fetching contributors…
Cannot retrieve contributors at this time
40 lines (32 sloc) 754 Bytes
{% set version = "1.18" %}
package:
name: cutadapt
version: {{ version }}
source:
url: https://files.pythonhosted.org/packages/fd/4d/3ac2947d36e2d56ce1513dc4a53d3a45e520d7ccfb43af9ba85408e44c69/cutadapt-1.18.tar.gz
sha256: 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9
build:
number: 0
script: pip install --no-deps .
requirements:
host:
- pip
- python
- xopen >=0.3.2
run:
- python
- xopen >=0.3.2
- pigz
test:
imports:
- cutadapt
commands:
- cutadapt --version
about:
home: https://cutadapt.readthedocs.io/
license: MIT License
summary: 'trim adapters from high-throughput sequencing reads'
extra:
identifiers:
- biotools:cutadapt
- doi:10.14806/ej.17.1.200