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{% set name = "genomedata" %}
{% set version = "1.4.4" %}
{% set sha256 = "06fb344902a1a759a7e894a21484ef2d6e604406ec6b0d127251a0a1081b4862" %}
package:
name: {{ name|lower }}
version: {{ version }}
source:
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
sha256: {{ sha256 }}
build:
number: 4
requirements:
build:
- {{ compiler('c') }}
host:
- python
- six
- hgtools
- hdf5
- zlib
run:
- python
- six
- hdf5
- pytables >=3.4.3
- path.py
- textinput
- bedtools
- ucsc-bigwigtobedgraph
test:
# Copied to PATH in build.sh
# source_files:
# - test/*.py
# - test/data/*
commands:
# Smoke test commands
- genomedata-info --help
- genomedata-query --help
- genomedata-histogram --help
- genomedata-load --help
- genomedata-load-seq --help
- genomedata-load-assembly --help
- genomedata-open-data --help
- genomedata-hardmask --help
- genomedata-close-data --help
- genomedata-report --help
- genomedata-erase-data --help
- genomedata-load-data --help
# Test functionality
- run_genomedata_tests.py
about:
home: http://genomedata.hoffmanlab.org/
license: GPL2
summary: 'tools for accessing large amounts of genomic data'
extra:
identifiers:
- biotools:genomedata
- doi:10.1093/bioinformatics/btq164
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