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{% set name = "mirtrace" %}
{% set version = "1.0.0" %}
# Do not forget to update the version string in the peptide-shaker.py file
about:
home: https://github.com/friedlanderlab/mirtrace
license: GPL-2.0
licence_file: LICENCE
summary: |
miRTrace is a new quality control and taxonomic tracing tool developed specifically for small RNA sequencing data (sRNA-Seq).
Each sample is characterized by profiling sequencing quality, read length, sequencing depth and miRNA complexity and also the
amounts of miRNAs versus undesirable sequences (derived from tRNAs, rRNAs and sequencing artifacts). In addition to these routine
quality control (QC) analyses, miRTrace can accurately and sensitively resolve taxonomic origins of small RNA-Seq data based on the
composition of clade-specific miRNAs. This feature can be used to detect cross-clade contaminations in typical lab settings. It can
also be applied for more specific applications in forensics, food quality control and clinical diagnosis, for instance tracing the
origins of meat products or detecting parasitic microRNAs in host serum.
package:
name: mirtrace
version: {{ version }}
build:
noarch: generic
number: 0
source:
url: https://github.com/friedlanderlab/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.zip
sha256: 94897cc162f1d09cc0cc61394e1dcc2d86e3f52d590cee172afbaecf7786b473
requirements:
host:
run:
- openjdk >=8.0.144
- python
test:
commands:
- mirtrace -v
extra:
identifiers:
- biotools:mirtrace
- doi:10.1186/s13059-018-1588-9
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