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package:
name: multiqc
version: "1.7"
source:
url: https://github.com/ewels/MultiQC/archive/v1.7.tar.gz
sha256: 1a6bea211ab584164a6c7513812ede57b28712bc528bd34cc5f1a581e7410644
build:
number: 3
noarch: python
preserve_egg_dir: True
requirements:
host:
- python
- setuptools
run:
- python
- setuptools
- click
- future >0.14.0
- jinja2 >=2.9
- lzstring
- markdown
- matplotlib >=2.1.1,<3.0.0
- numpy
- pyyaml
- requests
- simplejson
- spectra >=0.0.10
test:
# Python imports
imports:
- multiqc
- multiqc.modules
- multiqc.modules.adapterRemoval
- multiqc.modules.afterqc
- multiqc.modules.bamtools
- multiqc.modules.bbmap
- multiqc.modules.bcftools
- multiqc.modules.bcl2fastq
- multiqc.modules.biobloomtools
- multiqc.modules.biscuit
- multiqc.modules.bismark
- multiqc.modules.bowtie1
- multiqc.modules.bowtie2
- multiqc.modules.busco
- multiqc.modules.clipandmerge
- multiqc.modules.clusterflow
- multiqc.modules.conpair
- multiqc.modules.custom_content
- multiqc.modules.cutadapt
- multiqc.modules.damageprofiler
- multiqc.modules.dedup
- multiqc.modules.deeptools
- multiqc.modules.disambiguate
- multiqc.modules.fastp
- multiqc.modules.fastq_screen
- multiqc.modules.fastqc
- multiqc.modules.featureCounts
- multiqc.modules.flash
- multiqc.modules.flexbar
- multiqc.modules.gatk
- multiqc.modules.goleft_indexcov
- multiqc.modules.happy
- multiqc.modules.hicexplorer
- multiqc.modules.hicpro
- multiqc.modules.hicup
- multiqc.modules.hisat2
- multiqc.modules.homer
- multiqc.modules.htseq
- multiqc.modules.interop
- multiqc.modules.jellyfish
- multiqc.modules.kallisto
- multiqc.modules.kat
- multiqc.modules.leehom
- multiqc.modules.longranger
- multiqc.modules.macs2
- multiqc.modules.methylQA
- multiqc.modules.minionqc
- multiqc.modules.mirtrace
- multiqc.modules.peddy
- multiqc.modules.phantompeakqualtools
- multiqc.modules.picard
- multiqc.modules.preseq
- multiqc.modules.prokka
- multiqc.modules.qorts
- multiqc.modules.qualimap
- multiqc.modules.quast
- multiqc.modules.rna_seqc
- multiqc.modules.rsem
- multiqc.modules.rseqc
- multiqc.modules.salmon
- multiqc.modules.samblaster
- multiqc.modules.samtools
- multiqc.modules.sargasso
- multiqc.modules.skewer
- multiqc.modules.slamdunk
- multiqc.modules.snpeff
- multiqc.modules.sortmerna
- multiqc.modules.stacks
- multiqc.modules.star
- multiqc.modules.supernova
- multiqc.modules.theta2
- multiqc.modules.tophat
- multiqc.modules.trimmomatic
- multiqc.modules.vcftools
- multiqc.modules.verifybamid
- multiqc.plots
- multiqc.templates
- multiqc.templates.default
- multiqc.templates.default_dev
- multiqc.templates.geo
- multiqc.templates.sections
- multiqc.templates.simple
- multiqc.utils
commands:
- multiqc --version
- multiqc .
about:
home: http://multiqc.info
license: GNU General Public License v3 (GPLv3)
license_family: GPL3
license_file: LICENSE
summary: 'Create aggregate bioinformatics analysis reports across many samples and tools'
dev_url: https://github.com/ewels/MultiQC
extra:
container:
# click requires a unicode locale when used with Python 3
# extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
extended-base: true
skip-lints:
- uses_setuptools # uses pkg_resources
identifiers:
- biotools:multiqc
- doi:https://doi.org/10.1093/bioinformatics/btw354
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