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package:
name: sshmm
version: "1.0.7"
source:
url: https://github.molgen.mpg.de/heller/ssHMM/archive/v1.0.7.tar.gz
sha256: c7c8362895c6def22cab6cfc06a7cbdce8a6483e9f36d3259227f8f4c3de0801
build:
number: 2
skip: True [osx or py3k]
requirements:
build:
- {{ compiler('c') }}
host:
- python
- pip
- libxml2
- graphviz
run:
- python
- weblogo
- bedtools
- numpy 1.11
- forgi
- graphviz
- pygraphviz
- rnashapes 2.1.6
- rnastructure
- ghmm
- libxml2
test:
commands:
- train_seqstructhmm -h
- preprocess_dataset -h
about:
home: https://github.molgen.mpg.de/heller/ssHMM
license: GPL-3.0
license_file: LICENSE
summary: ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.
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