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{% set name = "tb-profiler" %}
{% set version = "2.6.1" %}
{% set sha256 = "4b1285570318d50149f169f807ddbfe8f007cf52cdb7958a13e9e4678cb916b2" %}
package:
name: {{name}}
version: {{version}}
source:
url: https://github.com/jodyphelan/TBProfiler/archive/v{{version}}.tar.gz
sha256: '{{sha256}}'
build:
noarch: python
number: 2
requirements:
host:
- python
- pip
- gatk4
- samtools>=1.9
run:
- python>=3.6
- pathogen-profiler>=1.6.1
- tqdm
- git
test:
imports:
- tbprofiler
commands:
- tb-profiler -h
about:
home: https://github.com/jodyphelan/TBProfiler
license: GPL3
license_file: LICENSE
summary: Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from WGS data
extra:
identifiers:
- doi:10.1186/s13073-019-0650-x
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