From 3c6e92d5a53412414ff4dbe668ef3ff0ae13e6ed Mon Sep 17 00:00:00 2001
From: nickp60 <nickp60@users.noreply.github.com>
Date: Thu, 18 Oct 2018 16:36:04 +0100
Subject: [PATCH] update recipe for 3.9.1 (#11397)

---
 recipes/spades/3.9.1/build.sh  |  8 ++++++++
 recipes/spades/3.9.1/meta.yaml | 31 +++++++++++++++++++++++++++++++
 2 files changed, 39 insertions(+)
 create mode 100644 recipes/spades/3.9.1/build.sh
 create mode 100644 recipes/spades/3.9.1/meta.yaml

diff --git a/recipes/spades/3.9.1/build.sh b/recipes/spades/3.9.1/build.sh
new file mode 100644
index 0000000000000..4629620a7735b
--- /dev/null
+++ b/recipes/spades/3.9.1/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+
+cp -r bin $outdir
+cp -r share $outdir
+ln -s $outdir/bin/* $PREFIX/bin
diff --git a/recipes/spades/3.9.1/meta.yaml b/recipes/spades/3.9.1/meta.yaml
new file mode 100644
index 0000000000000..fef352bdc551d
--- /dev/null
+++ b/recipes/spades/3.9.1/meta.yaml
@@ -0,0 +1,31 @@
+package:
+  name: spades
+  version: '3.9.1'
+
+source:
+  url: http://spades.bioinf.spbau.ru/release3.9.1/SPAdes-3.9.1-Linux.tar.gz  # [linux]
+  md5: 095f4f7dd0e6496156df5d7c9419a70f                                      # [linux]
+  url: http://spades.bioinf.spbau.ru/release3.9.1/SPAdes-3.9.1-Darwin.tar.gz # [osx]
+  md5: d41d8cd98f00b204e9800998ecf8427e                                      # [osx]
+
+build:
+  number: 0
+  skip: True  # [py36]
+
+requirements:
+  run:
+    - python
+
+test:
+  commands:
+    - spades.py --test && rm -rf spades_test
+
+about:
+  home: http://bioinf.spbau.ru/en/spades
+  license: GPLv2
+  summary: SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.
+
+extra:
+  identifiers:
+    - biotools:Spades
+    - doi:10.1089/cmb.2012.0021