From dbdfaef7b2dd5ea5ff3b14852c743181c3de86c6 Mon Sep 17 00:00:00 2001
From: Vivek Rai <mail@raivivek.in>
Date: Sun, 23 Feb 2020 23:16:10 -0500
Subject: [PATCH 1/3] Add r-txrevise

Signed-off-by: Vivek Rai <mail@raivivek.in>
---
 recipes/r-txrevise/meta.yaml | 61 ++++++++++++++++++++++++++++++++++++
 1 file changed, 61 insertions(+)
 create mode 100644 recipes/r-txrevise/meta.yaml

diff --git a/recipes/r-txrevise/meta.yaml b/recipes/r-txrevise/meta.yaml
new file mode 100644
index 0000000000000..ed03d6d073232
--- /dev/null
+++ b/recipes/r-txrevise/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = 'txrevise' %}
+{% set version = '0.1' %}
+{% set hash = '6a0c987ed66399ed4332e6eb5a4fc22d91daadca3435e908366952b5e9d53609' %}
+
+package:
+  name: r-{{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/kauralasoo/txrevise/archive/v{{ version }}.tar.gz
+  sha256: {{ hash }}
+
+build:
+  number: 0
+  noarch: generic
+  script: R CMD INSTALL --build .
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  host:
+    - bioconductor-iranges
+    - bioconductor-genomicfeatures
+    - bioconductor-genomicranges
+    - r-base
+    - r-dplyr
+    - r-purrr
+    - r-purrrlyr
+    - r-ggplot2
+    - r-readr
+    - r-tidyr
+  run:
+    - bioconductor-iranges
+    - bioconductor-genomicfeatures
+    - bioconductor-genomicranges
+    - r-base
+    - r-dplyr
+    - r-purrr
+    - r-purrrlyr
+    - r-ggplot2
+    - r-readr
+    - r-tidyr
+
+test:
+  commands:
+    - '$R -e "library(''txrevise'')"'
+
+about:
+  home: https://github.com/kauralasoo/txrevise
+  license: Apache License, Version 2.0
+  summary: Construct custom transcript annotations for Salmon and kallisto
+  description: |
+    txrevise R package provides utilites to pre-process Ensembl transcript annotations to
+    quantify differences in transcript strucuture (alternative promoters, alternative
+    splicing, alternative poly-adenylation) either between experimental conditions or
+    genotypes (e.g. for transcript usage quntitative trait loci (tuQTL) mapping).
+  maintainers: raivivek
+extra:
+  identifiers:
+    - doi:10.7554/eLife.41673

From 6d856f149398010e3168edc0bc3ec993bd300ca2 Mon Sep 17 00:00:00 2001
From: Vivek Rai <mail@raivivek.in>
Date: Mon, 24 Feb 2020 10:42:25 -0500
Subject: [PATCH 2/3] Update license value

Signed-off-by: Vivek Rai <mail@raivivek.in>
---
 recipes/r-txrevise/meta.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/recipes/r-txrevise/meta.yaml b/recipes/r-txrevise/meta.yaml
index ed03d6d073232..4add336a74710 100644
--- a/recipes/r-txrevise/meta.yaml
+++ b/recipes/r-txrevise/meta.yaml
@@ -48,7 +48,8 @@ test:
 
 about:
   home: https://github.com/kauralasoo/txrevise
-  license: Apache License, Version 2.0
+  license: Apache 2.0
+  license_family: Apache
   summary: Construct custom transcript annotations for Salmon and kallisto
   description: |
     txrevise R package provides utilites to pre-process Ensembl transcript annotations to

From e28dfc26446b9f524cafd7b710e9ab302bcb3f5d Mon Sep 17 00:00:00 2001
From: Vivek Rai <mail@raivivek.in>
Date: Mon, 24 Feb 2020 18:32:22 -0500
Subject: [PATCH 3/3] Specify R versions

Signed-off-by: Vivek Rai <mail@raivivek.in>
---
 recipes/r-txrevise/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/r-txrevise/meta.yaml b/recipes/r-txrevise/meta.yaml
index 4add336a74710..b6c873968aeca 100644
--- a/recipes/r-txrevise/meta.yaml
+++ b/recipes/r-txrevise/meta.yaml
@@ -23,7 +23,7 @@ requirements:
     - bioconductor-iranges
     - bioconductor-genomicfeatures
     - bioconductor-genomicranges
-    - r-base
+    - r-base >=3.3
     - r-dplyr
     - r-purrr
     - r-purrrlyr
@@ -34,7 +34,7 @@ requirements:
     - bioconductor-iranges
     - bioconductor-genomicfeatures
     - bioconductor-genomicranges
-    - r-base
+    - r-base >=3.3
     - r-dplyr
     - r-purrr
     - r-purrrlyr